Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.2e-121 441.0 223 100.0
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 3.2e-79 300.1 217 67.7
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 1.7e-64 251.1 199 60.8
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 1.5e-63 248.1 224 57.6
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 1.2e-62 245.0 203 60.6
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.1e-62 244.2 215 57.7
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 6.1e-62 242.7 223 54.7
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.4e-61 241.5 182 62.1
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 4.0e-61 240.0 183 61.7
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 5.2e-61 239.6 220 58.2
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 6.8e-61 239.2 221 54.3
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 1.7e-59 234.6 214 57.0
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 2.2e-59 234.2 220 54.1
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 5.3e-58 229.6 220 52.7
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 2.0e-57 227.6 225 52.4
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 2.7e-57 227.3 220 51.8
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.7e-57 227.3 170 61.8
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 6.5e-56 222.6 219 53.0
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 3.2e-55 220.3 198 52.5
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 9.4e-55 218.8 180 56.7
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 1.2e-54 218.4 176 57.4
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 2.1e-54 217.6 228 52.2
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 2.1e-54 217.6 220 54.1
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 4.7e-54 216.5 188 57.4
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 1.4e-53 214.9 206 54.9
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.8e-53 214.5 185 57.3
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 1.8e-53 214.5 219 51.6
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 2.3e-53 214.2 196 53.6
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.5e-52 211.5 215 48.8
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 1.5e-52 211.5 199 54.8
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 2.6e-52 210.7 224 51.3
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 3.4e-52 210.3 185 54.1
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 3.4e-52 210.3 185 54.1
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 3.4e-52 210.3 198 50.5
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 4.4e-52 209.9 210 49.5
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 4.4e-52 209.9 170 57.6
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 7.5e-52 209.1 221 51.1
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.3e-51 208.4 177 55.4
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.3e-51 208.4 177 54.8
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.7e-51 208.0 220 49.1
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 3.7e-51 206.8 200 53.0
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 4.8e-51 206.5 190 50.5
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 8.3e-51 205.7 196 49.5
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 8.3e-51 205.7 181 55.2
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 1.1e-50 205.3 184 53.3
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.4e-50 204.1 219 50.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 3.1e-50 203.8 212 51.4
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 4.1e-50 203.4 196 49.0
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 4.1e-50 203.4 220 49.5
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 4.1e-50 203.4 192 54.2
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 5.4e-50 203.0 220 49.1
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 4.5e-49 199.9 223 49.3
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 1.3e-48 198.4 191 51.8
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 3.8e-48 196.8 173 56.1
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 6.6e-48 196.1 213 49.3
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.5e-47 194.1 220 46.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 3.3e-47 193.7 192 51.6
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.3e-47 193.7 179 52.5
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 5.5e-47 193.0 179 53.1
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 7.2e-47 192.6 205 50.2
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 9.5e-47 192.2 179 52.0
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.2e-46 191.8 179 52.5
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.6e-46 191.4 226 45.6
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 1.6e-46 191.4 190 49.5
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 2.8e-46 190.7 179 52.5
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 6.1e-46 189.5 223 45.7
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 8.0e-46 189.1 179 50.8
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.4e-45 188.3 223 45.7
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.8e-45 188.0 226 45.6
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.8e-45 188.0 220 44.1
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 4.0e-45 186.8 166 54.2
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 6.8e-45 186.0 197 44.7
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 6.8e-45 186.0 197 44.7
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 8.9e-45 185.7 197 49.2
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 1.5e-44 184.9 149 57.0
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 5.7e-44 183.0 218 44.0
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 4.9e-43 179.9 201 47.8
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 3.5e-41 173.7 187 43.9
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 4.5e-41 173.3 213 46.0
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 5.9e-41 172.9 191 46.1
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 7.8e-41 172.6 160 55.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.3e-40 171.0 218 41.7
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 5.0e-40 169.9 173 50.3
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 4.3e-39 166.8 210 44.8
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 9.5e-39 165.6 193 43.5
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 1.0e-37 162.2 183 42.6
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 1.4e-37 161.8 172 45.9
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.3e-37 161.0 211 45.0
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 2.0e-36 157.9 183 43.7
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.4e-34 151.0 196 43.9
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.3e-32 145.2 197 39.6
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.3e-32 145.2 197 39.6
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.7e-32 144.8 108 62.0
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.9e-31 141.4 108 61.1
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 8.0e-30 136.0 116 53.4
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 8.9e-29 132.5 111 58.6
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 5.8e-28 129.8 108 58.3
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 9.8e-28 129.0 108 51.9
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 3.0e-24 117.5 108 51.9
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 9.5e-23 112.5 86 55.8
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 8.1e-22 109.4 220 37.7
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 1.5e-15 88.6 222 28.8
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 1.1e-13 82.4 222 27.9
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 2.9e-11 74.3 43 79.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.9e-11 74.3 43 79.1
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 9.3e-10 69.3 43 72.1
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 1.2e-09 68.9 53 50.9
Zm00001eb434610 Zea mays HOM05D006980 ORTHO05D008704 1.6e-09 68.6 102 30.4
CANSAT35G0540 Cannabis sativa HOM05D007172 ORTHO05D009267 5.6e-07 60.1 145 25.5
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 2.8e-06 57.8 42 54.8
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 3.6e-06 57.4 132 22.7


User provided reference genes

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