Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 9.2e-292 1006.1 497 100.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 4.8e-216 754.6 483 78.3
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.2e-212 740.7 477 78.8
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.3e-210 735.7 478 77.0
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.0e-210 735.3 475 76.6
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 8.8e-210 733.8 478 76.8
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.5e-209 733.0 487 76.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.3e-209 731.9 479 78.3
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.7e-208 729.6 483 76.0
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 9.1e-207 723.8 478 76.4
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.9e-204 716.1 483 75.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.2e-204 715.3 482 75.5
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 7.2e-204 714.1 474 75.5
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.6e-203 713.0 482 73.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.1e-203 712.6 491 75.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.5e-201 706.4 490 73.5
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 5.7e-201 704.5 484 73.8
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.7e-201 704.5 491 73.1
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 7.5e-201 704.1 503 72.2
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.3e-200 703.4 483 73.7
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.7e-200 703.0 491 73.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.8e-200 701.4 483 73.7
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 6.3e-200 701.0 487 72.1
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.2e-198 696.8 480 73.1
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.7e-198 695.7 487 72.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 2.7e-198 695.7 476 72.9
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.5e-198 695.3 484 72.3
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 4.2e-196 688.3 491 71.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.1e-195 686.0 491 71.5
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 4.7e-195 684.9 480 73.8
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.0e-194 683.7 480 71.9
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.2e-193 680.2 477 73.6
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 7.5e-193 677.6 475 72.0
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.2e-192 676.0 484 72.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-191 673.3 484 70.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.1e-191 671.8 496 69.8
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 4.5e-190 668.3 476 71.4
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 5.9e-190 667.9 528 67.0
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.3e-189 666.0 482 70.1
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 8.0e-187 657.5 473 72.3
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.4e-185 651.7 476 71.8
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.9e-184 648.3 474 71.5
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 6.4e-184 647.9 478 69.7
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 2.4e-183 646.0 478 69.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.7e-182 642.5 476 67.4
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 4.6e-182 641.7 478 70.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.9e-182 641.3 479 70.4
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 7.8e-182 641.0 477 68.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.3e-181 640.2 462 69.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.9e-181 638.6 472 70.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.5e-180 636.0 478 67.8
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.3e-180 635.6 476 68.7
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 2.8e-179 632.5 478 68.2
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.8e-179 632.5 475 68.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 2.8e-179 632.5 478 68.2
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 3.1e-178 629.0 480 68.1
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.1e-178 629.0 464 70.7
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 6.8e-178 627.9 473 69.1
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.6e-177 625.9 481 67.8
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.6e-177 625.9 481 67.8
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 9.8e-177 624.0 478 67.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 9.8e-177 624.0 493 66.7
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 6.4e-176 621.3 483 67.3
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 4.1e-175 618.6 486 67.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.2e-174 617.1 478 68.0
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 2.0e-174 616.3 496 66.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 3.5e-174 615.5 474 68.4
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.5e-172 610.1 452 70.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.9e-172 609.8 528 61.4
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 7.3e-172 607.8 473 68.5
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 8.1e-171 604.4 472 67.8
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 5.2e-170 601.7 467 66.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 8.9e-170 600.9 476 64.5
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 8.9e-170 600.9 494 63.4
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.4e-167 593.6 486 65.0
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 4.6e-166 588.6 476 65.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.0e-165 587.4 475 64.6
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 6.2e-163 578.2 477 63.9
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 2.0e-161 573.2 402 72.1
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.3e-160 570.5 469 63.3
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 4.9e-160 568.5 487 61.6
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 4.6e-158 562.0 503 61.6
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.1e-156 557.4 489 61.6
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 4.3e-156 555.4 369 75.1
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.7e-155 552.0 477 61.0
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 5.2e-154 548.5 483 61.7
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 4.4e-153 545.4 482 60.8
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.3e-152 543.9 553 55.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 2.9e-152 542.7 462 64.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.2e-151 539.3 517 58.4
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 3.9e-149 532.3 477 60.6
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 2.2e-144 516.5 482 56.0
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.4e-143 513.8 407 66.3
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.2e-143 512.3 472 61.9
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 2.1e-142 510.0 382 69.4
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.5e-140 503.8 483 58.6
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 9.6e-140 501.1 513 53.8
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 9.6e-140 501.1 276 85.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 4.5e-137 492.3 452 60.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 9.9e-137 491.1 403 64.8
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 7.1e-135 485.0 849 38.4
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.8e-133 480.3 502 57.6
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 4.8e-131 472.2 550 48.5
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 1.1e-130 471.1 471 53.7
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-130 470.3 449 57.0
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 3.2e-127 459.5 408 62.7
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.6e-126 455.7 511 50.1
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.9e-124 450.3 264 81.1
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-113 414.1 469 52.2
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 4.5e-113 412.5 345 63.5
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 7.9e-110 401.7 477 51.4
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 4.4e-108 396.0 383 60.1
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-95 354.4 638 37.6
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.8e-93 347.4 432 52.3
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 3.0e-93 346.7 226 70.4
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.0e-89 334.0 344 55.5
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 9.5e-79 298.5 196 70.9
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 9.5e-79 298.5 471 37.8
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 9.2e-74 282.0 261 52.9
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 7.0e-66 255.8 281 45.9
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 5.0e-64 249.6 136 85.3
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 7.3e-63 245.7 395 42.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.1e-62 244.2 130 87.7
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.7e-57 227.3 298 42.3
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.6e-54 218.0 294 40.8
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.8e-49 199.1 113 81.4
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-43 180.6 103 81.6
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 9.9e-36 155.6 86 83.7
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.4e-26 124.4 76 78.9
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.6e-22 111.7 60 81.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.2e-20 105.5 81 63.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.5e-15 88.6 126 40.5
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.5e-15 88.6 53 81.1
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 3.7e-14 84.0 41 90.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.8e-13 81.6 69 58.0
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.9e-11 74.3 94 46.8
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 6.5e-11 73.2 49 71.4
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 3.2e-10 70.9 45 75.6
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 4.2e-10 70.5 72 54.2
Haze_13635 Corylus avellana HOM05D005440 ORTHO05D165560 8.2e-06 56.2 39 76.9


User provided reference genes

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