Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 2.0e-294 1015.0 506 100.0
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.5e-244 848.6 510 83.1
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 8.9e-242 840.1 506 83.4
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 4.4e-241 837.8 512 80.9
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.2e-240 835.5 506 83.6
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.2e-239 831.6 508 81.5
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.0e-238 828.9 507 81.1
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.3e-237 825.5 509 81.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 5.0e-237 824.3 512 80.1
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.5e-236 822.8 508 79.9
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 4.7e-235 817.8 508 80.1
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 6.2e-235 817.4 508 80.3
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.8e-234 815.8 512 79.1
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 3.1e-234 815.1 505 79.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 5.8e-233 810.8 509 79.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.4e-231 806.2 506 79.8
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 4.6e-230 801.2 509 78.2
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.9e-229 798.1 509 78.0
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.1e-227 792.3 507 76.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.6e-227 791.6 507 78.9
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 8.1e-227 790.4 546 72.2
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.1e-226 788.5 507 77.5
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.8e-226 787.3 512 76.6
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.8e-225 784.3 509 77.8
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.8e-225 784.3 492 78.5
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 9.9e-225 783.5 508 76.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.2e-224 782.3 512 76.2
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.9e-224 781.9 506 77.9
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.2e-223 778.5 508 76.4
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.6e-222 776.2 503 76.9
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.6e-222 776.2 510 74.7
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.5e-222 775.0 514 73.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 7.8e-222 773.9 512 74.6
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.0e-221 773.5 510 75.1
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.0e-221 773.5 506 75.3
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.7e-221 772.7 506 73.9
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.3e-221 772.3 505 73.9
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 8.6e-221 770.4 507 75.7
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.1e-220 770.0 506 76.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.1e-220 770.0 475 80.0
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.9e-220 769.2 474 79.5
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.9e-220 769.2 506 76.7
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 4.3e-220 768.1 505 75.8
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.2e-219 766.5 475 79.4
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.1e-219 765.8 507 75.7
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 4.7e-219 764.6 546 71.1
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 6.2e-219 764.2 505 75.6
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 6.2e-219 764.2 506 75.9
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 8.1e-219 763.8 507 75.3
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.1e-218 763.5 506 75.7
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-218 763.5 507 74.2
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.4e-218 763.1 514 73.9
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.4e-218 762.3 546 70.9
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.4e-218 762.3 505 75.0
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.1e-218 761.9 506 75.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.1e-218 761.9 507 75.5
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.0e-218 761.5 507 75.5
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.0e-218 761.5 507 75.5
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 4.0e-218 761.5 514 74.7
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 8.9e-218 760.4 506 75.5
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-217 759.6 507 75.0
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-217 759.6 508 76.2
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.5e-217 759.6 514 73.7
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.6e-217 758.8 508 76.2
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.6e-217 758.8 508 75.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.6e-217 758.8 510 72.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 4.4e-217 758.1 506 74.3
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 5.8e-217 757.7 510 73.5
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-216 756.1 509 74.7
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.7e-216 756.1 506 74.1
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.9e-216 755.4 506 74.9
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 6.4e-216 754.2 599 65.6
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.9e-215 752.7 506 72.7
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.4e-215 752.3 510 72.4
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 4.2e-215 751.5 506 75.3
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 4.2e-215 751.5 506 75.1
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 7.1e-215 750.7 506 75.3
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-214 750.0 506 75.3
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.1e-214 749.2 511 71.2
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 7.8e-214 747.3 474 78.5
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.0e-213 745.3 501 74.1
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.6e-213 744.2 506 73.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.6e-213 744.2 501 74.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.1e-212 743.4 505 72.3
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.1e-212 743.4 512 71.5
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.5e-212 742.3 513 73.1
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.1e-211 739.2 507 73.0
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.8e-211 738.8 507 73.0
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 3.1e-210 735.3 513 71.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.0e-210 734.9 513 71.0
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 3.4e-209 731.9 488 76.0
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 7.6e-209 730.7 504 71.6
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 7.6e-209 730.7 525 69.3
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.1e-207 726.9 452 80.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.1e-207 726.9 513 72.1
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.2e-207 724.9 510 70.8
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.1e-207 724.2 508 73.8
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.3e-207 723.8 508 73.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.3e-205 719.9 512 69.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.8e-203 712.2 565 65.5
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 8.1e-203 710.7 506 69.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.1e-203 710.7 533 70.7
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.4e-199 699.9 460 75.7
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 4.2e-199 698.4 497 70.6
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 5.4e-199 698.0 512 68.4
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.5e-196 689.9 499 68.3
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.5e-196 689.1 497 69.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.3e-196 688.7 505 69.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.6e-195 686.4 583 61.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.6e-195 686.4 524 67.2
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 3.7e-195 685.3 512 68.4
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.1e-194 682.2 508 68.7
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.9e-194 681.0 512 66.8
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.0e-193 679.5 471 73.5
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.6e-193 679.1 459 73.9
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.8e-193 677.9 525 65.5
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 7.6e-193 677.6 513 66.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 6.5e-192 674.5 507 67.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 7.1e-191 671.0 508 65.6
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 4.6e-190 668.3 448 75.0
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 7.9e-190 667.5 510 66.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.4e-175 620.2 402 73.6
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 4.2e-175 618.6 508 62.6
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.1e-173 611.7 400 74.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 1.6e-166 590.1 474 66.2
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 9.7e-156 554.3 542 53.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 9.7e-156 554.3 661 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 6.3e-155 551.6 534 54.3
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.4e-146 523.1 452 62.8
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.5e-144 515.0 415 62.9
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.0e-132 476.9 337 70.0
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 5.4e-130 468.8 505 52.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.6e-121 440.7 273 75.5
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.9e-120 436.0 272 81.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.5e-111 406.8 279 73.1
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.3e-87 326.2 245 67.8
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 9.0e-85 318.5 210 73.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.1e-82 311.6 240 64.2
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 8.1e-78 295.4 217 71.0
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 6.9e-77 292.4 243 60.5
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.1e-73 280.8 500 40.2
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 5.5e-66 256.1 554 32.1
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.2e-57 228.4 389 36.0
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.3e-45 186.4 187 52.9
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.8e-43 180.3 121 69.4
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.5e-42 178.3 138 66.7
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 8.2e-38 162.5 106 79.2
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.9e-36 156.4 112 67.0
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.9e-34 151.4 183 42.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.0e-33 146.0 246 40.7
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.3e-32 144.4 246 40.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 3.8e-27 127.1 67 88.1
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.8e-24 118.2 79 77.2
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.6e-17 94.0 165 29.1
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 8.9e-16 89.4 115 45.2
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.4e-13 82.0 72 55.6
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.6e-12 78.6 61 65.6
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.3e-11 75.5 216 28.7
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.5e-10 72.0 132 31.1
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.5e-10 72.0 103 41.7
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.0e-08 65.9 74 43.2
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-08 65.1 104 44.2
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.2e-08 63.5 36 83.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0


User provided reference genes

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