Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011485m.g Citrus clementina HOM05D007291 ORTHO05D009038 4.2e-146 522.3 280 100.0
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 2.9e-78 297.0 312 53.8
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 2.2e-70 270.8 306 48.7
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 1.5e-66 258.1 282 48.2
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 1.4e-64 251.5 242 55.8
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 6.9e-64 249.2 244 54.9
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.5e-63 248.1 315 46.3
Atru.chr13.2096 Acer truncatum HOM05D007291 ORTHO05D009038 5.8e-63 246.1 258 54.3
FvH4_5g33100 Fragaria vesca HOM05D007291 ORTHO05D009038 5.0e-62 243.0 252 50.4
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 1.9e-61 241.1 248 50.0
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 2.5e-61 240.7 298 46.6
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 2.5e-61 240.7 298 46.6
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 4.2e-61 240.0 294 47.3
AUR62012554 Chenopodium quinoa HOM05D007291 ORTHO05D009038 7.1e-61 239.2 279 44.4
AUR62014645 Chenopodium quinoa HOM05D007291 ORTHO05D009038 9.3e-61 238.8 279 44.4
Sc03g0007430 Simmondsia chinensis HOM05D000068 ORTHO05D004691 1.6e-60 238.0 279 47.0
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 6.1e-60 236.1 298 46.3
Haze_11634 Corylus avellana HOM05D007291 ORTHO05D009038 2.3e-59 234.2 228 53.5
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 3.9e-59 233.4 278 47.8
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 3.9e-59 233.4 278 47.8
Ah.14g088580 Amaranthus hybridus HOM05D007291 ORTHO05D009038 1.9e-58 231.1 285 42.5
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 1.9e-58 231.1 241 51.0
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 8.2e-57 225.7 305 42.6
QL02p057926 Quercus lobata HOM05D007291 ORTHO05D009038 6.9e-56 222.6 218 53.7
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 3.4e-55 220.3 294 40.1
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 7.7e-55 219.2 318 39.9
QL93p0100_0337 Quercus lobata HOM05D007291 ORTHO05D009038 7.7e-55 219.2 218 53.2
SalBow1G1723 Salvia bowleyana HOM05D007291 ORTHO05D009038 1.7e-54 218.0 312 39.7
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 2.9e-54 217.2 289 42.2
PGR044G2558 Punica granatum HOM05D007291 ORTHO05D009038 5.0e-54 216.5 308 43.8
Oeu032258.1 Olea europaea HOM05D007291 ORTHO05D009038 8.5e-54 215.7 282 39.4
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 8.5e-54 215.7 222 49.5
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 1.1e-53 215.3 293 41.0
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 1.1e-53 215.3 275 45.8
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 2.5e-53 214.2 290 42.4
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 4.2e-53 213.4 236 47.0
TAR371G0694 Trochodendron aralioides HOM05D007291 ORTHO05D009038 7.2e-53 212.6 192 56.2
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 2.1e-52 211.1 293 38.9
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 2.7e-52 210.7 213 50.7
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 2.3e-51 207.6 322 40.7
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 2.3e-51 207.6 245 46.9
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 8.8e-51 205.7 307 41.7
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 1.1e-50 205.3 236 47.5
CANSAT64G0946 Cannabis sativa HOM05D007291 ORTHO05D009038 9.7e-50 202.2 198 52.5
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 8.2e-49 199.1 303 40.3
Psat6g098880 Pisum sativum HOM05D007291 ORTHO05D009038 8.2e-49 199.1 313 38.7
Manes.16G125800 Manihot esculenta HOM05D007291 ORTHO05D009038 1.1e-48 198.7 217 48.4
SGA_v2.0_scaffold159G37611 Striga asiatica HOM05D007291 ORTHO05D009038 1.4e-48 198.4 285 39.3
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 5.3e-48 196.4 314 38.9
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 1.2e-47 195.3 266 39.5
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 3.4e-47 193.7 291 40.9
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 4.5e-47 193.4 273 43.6
Ca_26721_v3 Cicer arietinum L. HOM05D007291 ORTHO05D009038 2.9e-46 190.7 273 42.5
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 5.0e-46 189.9 255 43.9
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 3.2e-45 187.2 211 49.3
FAN04G0610 Fragaria x ananassa HOM05D007291 ORTHO05D009038 7.2e-45 186.0 195 52.3
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 7.2e-45 186.0 226 42.5
Nn4g24244 Nelumbo nucifera HOM05D007291 ORTHO05D009038 7.2e-45 186.0 175 54.9
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.2e-44 185.3 226 42.5
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 1.4e-43 181.8 236 45.3
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 1.8e-43 181.4 295 38.3
Phvul.003G005900 Phaseolus vulgaris HOM05D007291 ORTHO05D009038 3.9e-43 180.3 288 37.5
QL08p010035 Quercus lobata HOM05D007291 ORTHO05D009038 1.5e-42 178.3 262 42.7
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 2.6e-42 177.6 239 44.4
Aa31LG2G3020 Aethionema arabicum HOM05D007291 ORTHO05D009038 3.7e-41 173.7 206 48.5
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 4.8e-41 173.3 245 42.4
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.2e-39 168.7 256 37.9
Sopen05g029730 Solanum pennellii HOM05D007291 ORTHO05D009038 2.6e-39 167.5 259 37.5
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 4.5e-39 166.8 310 32.9
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 7.7e-39 166.0 246 37.8
Solyc05g051340.3 Solanum lycopersicum HOM05D007291 ORTHO05D009038 7.7e-39 166.0 224 39.3
Glyma.09G282100 Glycine max HOM05D007291 ORTHO05D009038 1.3e-38 165.2 301 35.5
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 5.5e-37 159.8 216 39.8
BcaB05g24168 Brassica carinata HOM05D007291 ORTHO05D009038 7.2e-37 159.5 187 46.0
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 9.4e-37 159.1 257 35.8
AT1G66345 Arabidopsis thaliana HOM05D007291 ORTHO05D009038 2.7e-36 157.5 266 39.5
CDE02G1611 Ceratophyllum demersum HOM05D007291 ORTHO05D009038 1.0e-35 155.6 248 35.1
Actinidia28812 Actinidia chinensis HOM05D007291 ORTHO05D009038 2.3e-35 154.5 238 37.4
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 2.0e-34 151.4 270 36.3
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 7.4e-34 149.4 246 36.2
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 2.8e-33 147.5 251 36.7
Medtr1g037260 Medicago truncatula HOM05D007291 ORTHO05D009038 1.4e-32 145.2 281 35.6
unitig_21.g20398 Utricularia gibba HOM05D007291 ORTHO05D009038 1.5e-29 135.2 205 41.5
FAN18G3657 Fragaria x ananassa HOM05D007291 ORTHO05D009038 1.9e-29 134.8 160 46.9
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 4.2e-29 133.7 251 31.5
AL2G24070 Arabidopsis lyrata HOM05D007291 ORTHO05D009038 6.1e-28 129.8 192 41.7
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 6.8e-27 126.3 187 38.0
Zm00001eb122930 Zea mays HOM05D007291 ORTHO05D009038 4.8e-25 120.2 275 32.0
Zm00001eb122940 Zea mays HOM05D007291 ORTHO05D009038 4.8e-25 120.2 275 32.0
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 5.4e-24 116.7 251 29.9
COL.COLO4_04575 Corchorus olitorius HOM05D007291 ORTHO05D009038 1.2e-23 115.5 162 40.1
Peaxi162Scf00939g00023 Petunia axillaris HOM05D007291 ORTHO05D009038 2.3e-19 101.3 141 39.7
Nitab4.5_0007769g0010 Nicotiana tabacum HOM05D007291 ORTHO05D009038 5.2e-19 100.1 142 40.8
Nitab4.5_0004679g0050 Nicotiana tabacum HOM05D007291 ORTHO05D009038 9.1e-16 89.4 124 41.9
Os01g0170800 Oryza sativa ssp. japonica HOM05D007291 ORTHO05D009038 7.2e-13 79.7 127 35.4
ECA238G1703 Erigeron canadensis HOM05D007291 ORTHO05D009038 4.7e-12 77.0 70 55.7
QL07p000406 Quercus lobata HOM05D007291 ORTHO05D009038 1.8e-11 75.1 56 58.9
TAR371G0834 Trochodendron aralioides HOM05D007291 ORTHO05D009038 3.0e-11 74.3 54 63.0
Gohir.A04G043900 Gossypium hirsutum HOM05D007291 ORTHO05D009038 5.7e-10 70.1 102 39.2
Eucgr.K02275 Eucalyptus grandis HOM05D007291 ORTHO05D009038 1.3e-09 68.9 84 47.6
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 7.0e-08 63.2 192 26.0
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 9.2e-08 62.8 232 24.1
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 1.2e-07 62.4 167 28.7
Aqoxy5G03884 Aquilegia oxysepala HOM05D007496 ORTHO05D009479 1.6e-07 62.0 203 28.1
Medtr1g037080 Medicago truncatula HOM05D007291 ORTHO05D009038 2.0e-07 61.6 92 44.6
Medtr3g448890 Medicago truncatula HOM05D007291 ORTHO05D009038 2.0e-07 61.6 92 44.6
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 2.0e-07 61.6 243 21.8
TAR636G1662 Trochodendron aralioides HOM05D007496 ORTHO05D009479 2.0e-07 61.6 146 29.5
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 2.7e-07 61.2 177 29.4
QL11p039609 Quercus lobata HOM05D007675 ORTHO05D009699 3.5e-07 60.8 212 26.9
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 4.6e-07 60.5 251 24.3
ATR0733G100 Amborella trichopoda HOM05D007675 ORTHO05D009699 4.6e-07 60.5 284 26.1
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 5.9e-07 60.1 143 27.3
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 5.9e-07 60.1 143 27.3
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 7.8e-07 59.7 212 25.9
Medtr1g036840 Medicago truncatula HOM05D007291 ORTHO05D009038 1.0e-06 59.3 113 37.2
Gohir.D01G172300 Gossypium hirsutum HOM05D007675 ORTHO05D009699 1.3e-06 58.9 174 29.3
CAN.G764.6 Capsicum annuum HOM05D007212 ORTHO05D009094 1.7e-06 58.5 113 30.1
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 1.7e-06 58.5 170 27.6
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 2.9e-06 57.8 169 29.6
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 2.9e-06 57.8 134 29.1
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 3.9e-06 57.4 180 25.0
CiPaw.05G059700 Carya illinoinensis HOM05D007675 ORTHO05D009699 3.9e-06 57.4 181 27.6
Gohir.A01G181200 Gossypium hirsutum HOM05D007675 ORTHO05D009699 3.9e-06 57.4 174 28.7
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 5.0e-06 57.0 170 30.0
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 5.0e-06 57.0 189 27.5
Medtr4g068800 Medicago truncatula HOM05D007675 ORTHO05D009699 6.6e-06 56.6 189 27.5
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 6.6e-06 56.6 101 30.7


User provided reference genes

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