Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.2e-288 995.0 523 100.0
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 4.2e-255 884.4 517 89.2
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 3.6e-254 881.3 515 88.2
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 8.8e-253 876.7 516 88.4
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.2e-252 876.3 502 90.0
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.0e-252 875.5 507 90.1
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.6e-252 875.2 502 89.8
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 3.7e-251 871.3 508 88.8
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 4.9e-251 870.9 534 85.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 5.0e-248 860.9 512 86.1
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 9.5e-247 856.7 531 83.8
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 1.5e-244 849.4 515 84.7
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 5.7e-244 847.4 519 83.6
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 9.8e-244 846.7 530 84.9
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.7e-243 845.9 527 82.7
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 4.9e-243 844.3 517 84.9
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 4.9e-243 844.3 511 84.0
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 6.4e-243 844.0 527 82.7
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 8.3e-243 843.6 517 84.1
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.1e-242 843.2 500 86.0
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.8e-242 842.4 521 83.5
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 3.2e-242 841.6 517 83.6
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 5.4e-242 840.9 523 83.9
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 5.4e-242 840.9 517 83.0
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 5.4e-242 840.9 514 82.7
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 9.2e-242 840.1 514 83.9
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 2.0e-241 839.0 501 85.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.0e-241 839.0 523 83.2
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.7e-241 838.6 506 84.2
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 2.7e-241 838.6 515 83.7
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 3.5e-241 838.2 515 83.9
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.3e-240 836.3 520 83.1
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 3.0e-240 835.1 527 83.3
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 5.6e-239 830.9 500 85.4
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 9.5e-239 830.1 519 81.5
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-238 829.7 517 82.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.8e-237 825.9 504 83.7
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 4.0e-237 824.7 501 85.0
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 2.0e-236 822.4 526 81.7
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 6.4e-235 817.4 518 82.4
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.3e-232 808.9 500 83.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.2e-230 803.1 536 77.8
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.6e-230 802.7 515 80.4
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.1e-229 800.0 505 81.4
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 3.1e-229 798.5 505 81.2
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.0e-229 798.1 529 78.4
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.2e-228 796.6 505 81.0
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.7e-227 792.7 502 80.9
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.2e-226 788.5 519 80.9
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 3.5e-225 785.0 518 79.7
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 3.0e-224 781.9 514 79.0
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.1e-224 781.2 515 79.0
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.5e-223 779.6 515 76.3
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 2.5e-223 778.9 501 80.8
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.5e-223 778.9 510 79.8
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 3.3e-223 778.5 501 81.4
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 5.6e-223 777.7 504 79.6
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 9.5e-223 776.9 512 80.7
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.2e-222 776.5 505 80.2
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.6e-222 775.0 516 78.5
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 4.7e-222 774.6 510 79.2
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 8.1e-222 773.9 528 77.3
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.4e-221 773.1 516 78.5
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 1.8e-221 772.7 501 80.0
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 5.2e-221 771.2 512 78.5
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.2e-220 770.0 504 79.6
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.5e-220 769.6 500 80.6
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.1e-218 763.5 501 79.6
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.2e-218 761.9 501 78.8
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 5.4e-218 761.1 498 79.3
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 2.7e-217 758.8 599 69.8
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.7e-216 756.1 522 76.6
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 2.3e-216 755.7 523 76.9
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 6.6e-216 754.2 511 77.3
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 8.6e-216 753.8 502 78.5
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 2.5e-215 752.3 517 76.4
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 4.3e-215 751.5 501 79.4
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 7.3e-215 750.7 518 74.9
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 9.6e-215 750.4 503 78.3
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 2.8e-214 748.8 459 83.7
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.2e-212 743.4 515 75.3
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.8e-211 738.4 605 67.8
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 3.9e-208 728.4 522 73.8
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 2.5e-199 699.1 487 74.9
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 8.1e-198 694.1 522 69.2
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.3e-197 691.4 596 65.6
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 6.9e-197 691.0 504 70.6
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.9e-195 685.6 522 71.1
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.2e-193 680.2 501 73.1
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 7.9e-193 677.6 503 69.8
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 5.6e-191 671.4 447 79.2
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.6e-191 671.4 426 81.7
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.1e-190 669.5 565 65.0
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 9.3e-186 654.1 535 64.9
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 9.3e-186 654.1 535 64.9
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 2.3e-176 622.9 484 67.8
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.7e-171 606.7 433 74.6
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 4.5e-164 582.0 403 75.7
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 2.2e-163 579.7 519 58.8
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 3.7e-158 562.4 487 60.4
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 3.8e-155 552.4 359 82.7
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 4.7e-153 545.4 384 76.3
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.3e-152 543.1 354 78.5
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.6e-145 520.4 329 82.1
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 2.5e-130 469.9 323 75.9
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 5.8e-119 432.2 248 85.9
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.3e-118 431.0 248 85.5
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.4e-112 411.0 510 46.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.2e-111 407.9 438 57.5
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 8.9e-104 381.7 489 45.4
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.9e-101 374.0 240 80.0
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.0e-87 327.4 491 40.7
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.4e-77 294.7 331 53.8
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 1.2e-76 291.6 172 84.3
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 2.4e-56 224.2 198 63.6
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 8.8e-51 205.7 504 33.5
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-50 204.9 496 33.9
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 2.0e-50 204.5 118 88.1
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 3.1e-48 197.2 480 34.8
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 3.5e-39 167.2 131 68.7
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 9.4e-37 159.1 290 41.0
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 4.0e-35 153.7 449 33.2
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 8.3e-33 146.0 469 32.2
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-32 145.2 496 30.8
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 6.1e-28 129.8 86 73.3
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-27 126.3 277 37.9
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 8.8e-27 125.9 277 37.5
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-26 124.4 332 35.2
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-24 119.0 234 40.2
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-23 115.5 194 42.8
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-23 115.5 300 33.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.9e-22 110.9 352 32.1
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-22 110.2 142 46.5
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-20 105.1 142 45.1
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 8.0e-20 102.8 208 40.4
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 1.8e-19 101.7 63 76.2
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-19 101.3 207 39.6
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 5.2e-19 100.1 74 66.2
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 6.8e-19 99.8 277 29.6
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.3e-17 95.5 390 29.2
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.8e-16 91.7 432 28.9
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 3.2e-16 90.9 432 28.9
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 9.2e-16 89.4 239 31.0
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 7.8e-15 86.3 330 27.6
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 8.0e-12 76.3 358 27.9
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-10 70.5 140 38.6
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 5.8e-10 70.1 291 29.6
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.7e-06 58.5 57 56.1


User provided reference genes

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