Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 1.6e-212 743.0 560 100.0
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 8.3e-124 448.4 559 66.9
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 2.2e-116 423.7 558 61.8
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 7.3e-112 408.7 518 63.5
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 2.4e-107 393.7 563 60.4
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 3.5e-106 389.8 565 59.5
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 7.8e-106 388.7 565 68.1
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 2.5e-104 383.6 565 68.1
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 5.2e-102 375.9 562 61.6
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 6.4e-100 369.0 552 53.1
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 4.6e-98 362.8 550 58.2
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 8.7e-97 358.6 559 57.2
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 1.1e-94 351.7 568 49.3
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 5.3e-94 349.4 563 60.0
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 2.0e-93 347.4 555 61.1
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 1.3e-92 344.7 555 49.9
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 3.2e-91 340.1 567 49.6
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 1.2e-90 338.2 527 57.7
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 6.0e-90 335.9 558 55.2
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 2.1e-87 327.4 670 44.0
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 1.1e-86 325.1 563 47.8
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 2.0e-85 320.9 560 56.8
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 2.6e-85 320.5 507 52.9
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 3.2e-83 313.5 559 46.9
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 1.2e-82 311.6 463 58.3
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 1.2e-82 311.6 561 51.7
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 2.1e-82 310.8 551 54.8
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 2.7e-82 310.5 550 46.0
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 2.7e-82 310.5 542 47.2
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 7.9e-82 308.9 558 49.3
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 1.8e-81 307.8 553 51.4
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 8.7e-81 305.4 550 50.4
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 1.5e-80 304.7 522 49.4
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 2.5e-80 303.9 483 50.9
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 5.6e-80 302.8 547 46.1
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 9.6e-80 302.0 519 48.7
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 1.3e-79 301.6 550 50.0
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 1.3e-79 301.6 529 48.8
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 1.6e-79 301.2 595 53.8
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 2.1e-79 300.8 554 51.1
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 2.1e-79 300.8 516 49.0
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 3.7e-79 300.1 557 51.9
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 1.4e-78 298.1 555 55.5
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 1.4e-78 298.1 553 46.1
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 1.0e-76 292.0 551 63.9
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 1.1e-75 288.5 554 45.1
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 7.1e-75 285.8 566 45.9
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 9.3e-75 285.4 524 46.4
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 2.7e-74 283.9 520 46.9
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 6.0e-74 282.7 504 54.4
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 1.8e-73 281.2 487 49.3
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 3.0e-73 280.4 560 47.1
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 5.1e-73 279.6 501 52.3
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 2.5e-72 277.3 567 49.2
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 5.7e-72 276.2 520 48.1
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 6.9e-70 269.2 490 54.9
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 1.1e-67 261.9 425 50.1
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 8.8e-65 252.3 495 46.3
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 5.7e-64 249.6 569 33.7
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 3.7e-63 246.9 515 46.0
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 2.4e-62 244.2 492 44.9
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 5.3e-62 243.0 495 43.8
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 5.9e-61 239.6 504 44.2
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 1.1e-59 235.3 574 41.8
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 1.9e-59 234.6 457 51.4
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 3.0e-57 227.3 487 35.1
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 1.8e-54 218.0 185 59.5
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 1.2e-53 215.3 230 56.1
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 1.2e-53 215.3 464 36.0
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 3.5e-53 213.8 521 30.9
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 5.0e-52 209.9 230 52.6
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 4.2e-51 206.8 504 44.0
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.6e-48 197.6 228 50.9
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 5.7e-48 196.4 378 53.4
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 4.8e-47 193.4 493 40.8
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 2.6e-45 187.6 236 46.2
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 1.7e-44 184.9 230 47.0
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 4.7e-42 176.8 309 56.0
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 6.1e-42 176.4 194 52.1
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 1.7e-39 168.3 190 51.6
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 6.3e-39 166.4 341 48.4
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 4.1e-38 163.7 181 51.4
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 9.1e-38 162.5 100 78.0
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 1.1e-35 155.6 129 59.7
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 1.1e-35 155.6 187 47.6
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 1.9e-35 154.8 527 36.2
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 4.2e-35 153.7 131 59.5
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 2.2e-31 141.4 183 50.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.9e-27 128.3 187 47.6
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 2.8e-26 124.4 195 43.1
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 4.7e-26 123.6 127 54.3
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 1.0e-25 122.5 171 46.8
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 1.0e-25 122.5 174 45.4
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 1.0e-25 122.5 141 46.1
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 2.0e-24 118.2 507 40.8
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 4.4e-24 117.1 128 46.1
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 3.7e-23 114.0 143 49.0
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 3.1e-22 110.9 388 55.4
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-19 101.7 68 66.2
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 2.0e-16 91.7 140 42.9
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 4.9e-15 87.0 239 31.0
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 8.3e-15 86.3 84 53.6
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.1e-14 85.9 126 42.9
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 4.1e-14 84.0 70 51.4
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 6.6e-12 76.6 177 28.2
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 2.5e-11 74.7 68 52.9
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 7.3e-11 73.2 79 51.9
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 4.7e-10 70.5 48 70.8
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 1.8e-09 68.6 76 50.0
QL02p059301 Quercus lobata HOM05D006674 ORTHO05D012891 3.4e-08 64.3 184 29.9
FAN19G0964 Fragaria x ananassa HOM05D000564 ORTHO05D004145 2.9e-07 61.2 66 54.5
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 6.4e-07 60.1 44 68.2
arahy.Tifrunner.gnm1.ann1.MX1HDN Arachis hypogaea HOM05D006674 ORTHO05D007954 2.4e-06 58.2 42 64.3
arahy.Tifrunner.gnm1.ann1.PS0MXP Arachis hypogaea HOM05D006674 ORTHO05D007954 2.4e-06 58.2 42 64.3


User provided reference genes

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