Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 0.0e+00 1468.4 725 100.0
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 0.0e+00 1080.1 743 71.5
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 0.0e+00 1079.3 705 72.9
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 0.0e+00 1077.0 705 72.6
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 9.6e-306 1053.1 735 69.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 6.9e-304 1047.0 745 68.2
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.4e-301 1039.3 738 68.2
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 5.4e-301 1037.3 728 69.5
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.5e-300 1034.6 698 70.8
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 2.3e-299 1031.9 708 70.5
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 4.8e-297 1024.2 731 67.0
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 6.2e-297 1023.8 731 66.9
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.2e-292 1009.6 738 66.1
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.1e-292 1008.8 732 67.1
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.1e-292 1008.8 738 66.7
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 3.5e-292 1008.1 734 67.3
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 2.3e-291 1005.4 698 68.1
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 9.6e-290 1000.0 798 61.9
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 6.2e-289 997.3 703 67.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 4.2e-285 984.6 748 63.9
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 5.5e-285 984.2 727 66.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.7e-284 981.9 691 68.7
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 2.5e-282 975.3 700 66.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.1e-277 959.9 710 65.1
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 4.2e-277 958.0 696 68.1
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 7.1e-277 957.2 710 64.2
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.1e-276 955.7 730 63.2
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 4.6e-276 954.5 727 64.0
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 2.3e-275 952.2 701 64.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.1e-273 945.7 700 65.1
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.1e-273 945.7 703 64.6
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.4e-272 942.2 739 63.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 5.3e-272 941.0 701 63.6
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 6.9e-272 940.6 697 65.1
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 6.9e-272 940.6 726 62.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.5e-271 939.5 717 64.2
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 2.0e-271 939.1 725 62.1
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 5.9e-271 937.6 721 63.4
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.0e-267 926.8 700 66.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.5e-266 922.2 718 62.5
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 9.7e-266 920.2 732 62.4
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.5e-263 912.9 708 63.4
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 5.9e-263 911.0 731 61.7
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.0e-262 910.2 724 61.6
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 2.2e-262 909.1 606 71.8
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 6.5e-262 907.5 731 60.5
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.5e-261 905.6 725 60.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 9.4e-261 903.7 734 60.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.6e-260 901.7 705 63.0
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.8e-259 899.4 706 62.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.8e-259 899.4 727 61.1
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 3.3e-258 895.2 720 60.3
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.8e-256 889.4 728 60.0
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.4e-255 885.2 744 59.4
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.7e-254 882.9 706 61.6
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.9e-253 879.4 735 61.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.2e-252 876.7 710 61.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.1e-250 870.2 620 68.7
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 3.3e-250 868.6 727 59.1
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.0e-248 860.9 725 59.0
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.6e-247 859.0 724 59.3
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 7.7e-247 857.4 703 60.2
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.0e-246 857.1 728 58.9
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.9e-246 855.5 712 60.1
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 8.5e-246 854.0 729 58.4
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.5e-245 852.4 703 59.7
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.2e-245 851.7 700 60.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.0e-243 845.1 723 58.2
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.6e-242 842.4 730 58.1
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 2.8e-241 839.0 729 57.6
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 4.8e-241 838.2 742 58.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 8.2e-241 837.4 724 58.1
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 3.1e-240 835.5 700 58.9
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 7.7e-239 830.9 730 57.4
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.5e-237 825.9 763 56.1
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 7.2e-237 824.3 699 57.7
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.8e-233 812.4 701 57.5
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 4.8e-233 811.6 665 58.5
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 8.3e-225 784.3 739 53.3
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.8e-224 783.1 704 56.2
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 9.2e-224 780.8 548 67.2
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.0e-222 777.3 727 52.5
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.3e-222 776.9 723 54.5
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 8.6e-222 774.2 677 57.2
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.5e-221 773.5 732 53.0
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.9e-221 773.1 747 52.2
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.0e-219 767.3 649 58.9
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.2e-217 759.6 662 57.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.4e-208 730.3 691 55.6
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.6e-207 726.9 633 56.4
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 4.6e-207 725.3 700 54.4
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.6e-207 725.3 717 50.9
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.0e-206 724.2 693 53.2
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.0e-198 697.6 732 49.6
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.9e-181 640.2 602 54.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.2e-178 630.9 722 48.6
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 9.9e-178 627.9 646 53.3
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.1e-176 621.7 485 62.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-160 571.2 427 66.5
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 2.8e-156 556.6 368 72.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.5e-149 534.3 513 55.6
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 2.2e-137 493.8 673 40.9
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.8e-132 476.9 713 37.7
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.3e-129 468.0 770 37.1
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 2.7e-122 443.7 761 35.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 7.7e-122 442.2 691 37.2
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.1e-119 434.1 613 40.1
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.2e-112 409.8 765 34.2
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.2e-109 401.7 783 33.1
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.8e-107 394.4 344 55.2
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.5e-104 384.8 370 52.2
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 6.4e-92 342.8 338 54.4
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.1e-83 313.5 284 58.8
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 3.9e-73 280.4 557 32.7
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-70 271.9 189 68.8
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 6.0e-66 256.5 176 71.0
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 9.0e-62 242.7 319 40.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 7.6e-61 239.6 167 64.1
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-59 235.3 182 65.4
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.9e-56 224.9 144 73.6
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-44 185.7 457 30.6
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-37 162.2 125 65.6
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.4e-32 143.3 128 48.4
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 3.6e-26 124.4 103 53.4
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.7e-24 117.1 75 70.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 4.4e-16 90.9 399 23.8
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 9.7e-16 89.7 101 52.5
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 3.5e-13 81.3 92 47.8
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.5e-13 81.3 80 47.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.9e-12 78.2 80 45.0
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.2e-11 74.3 47 78.7
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 3.7e-07 61.2 60 56.7
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 4.8e-07 60.8 41 70.7
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.1e-06 59.7 130 33.8


User provided reference genes

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