Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1521.9 800 100.0
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1292.7 800 85.1
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1263.8 801 82.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1255.4 805 81.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1240.3 803 81.1
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1240.3 801 80.8
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1239.2 798 79.8
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1238.0 813 79.7
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1234.9 804 80.3
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1233.8 811 79.5
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1232.6 798 80.1
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1232.6 801 80.3
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1223.4 801 79.9
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1221.8 801 79.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1214.1 781 81.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1213.7 809 79.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1213.0 791 79.3
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1209.1 798 78.9
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1206.4 797 80.3
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1201.0 799 78.2
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1199.5 758 82.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1199.5 813 78.1
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1195.6 804 78.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1194.1 807 78.1
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1194.1 846 74.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1191.4 805 78.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1188.3 801 78.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1184.9 804 78.0
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1180.2 798 77.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1179.9 803 77.2
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1179.5 800 76.6
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1178.3 869 73.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1177.9 790 77.3
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1177.5 801 77.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1171.0 807 76.7
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1170.6 799 77.2
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1169.8 792 77.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 805 77.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 802 76.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1167.9 797 77.4
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1166.4 800 76.1
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1165.6 792 77.1
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1164.4 805 76.9
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 797 76.9
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1161.7 808 75.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1158.7 806 76.1
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1157.9 849 74.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1155.2 804 75.0
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1154.0 798 76.3
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1152.5 800 75.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 795 77.9
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1147.5 789 75.7
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1143.3 786 76.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1142.9 803 74.8
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1142.9 830 74.0
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1140.6 800 75.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1140.6 896 69.2
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1139.0 806 74.8
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 785 76.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1132.1 809 72.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1130.2 806 74.3
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 793 74.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 787 75.6
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1122.8 794 74.3
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1122.1 785 75.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1121.3 785 75.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1121.3 785 75.4
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1121.3 801 74.3
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1121.3 811 73.0
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1118.6 797 74.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1114.0 797 73.3
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1114.0 792 72.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 807 73.7
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 795 72.3
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 787 74.2
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 787 74.2
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1108.6 763 76.8
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 811 71.1
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 812 71.2
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1099.3 795 71.9
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1099.0 818 72.0
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1099.0 797 72.5
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1096.3 806 71.8
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 646 86.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 801 71.5
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1085.1 806 70.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.5e-312 1074.7 646 85.3
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.5e-312 1074.3 646 85.1
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.4e-310 1069.3 793 71.1
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 4.2e-310 1067.8 806 70.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 7.3e-307 1057.0 787 70.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.1e-305 1053.1 800 72.2
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 803 69.5
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.8e-305 1050.4 806 68.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.3e-295 1019.6 787 69.6
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.2e-294 1014.6 786 68.8
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.6e-293 1012.7 803 68.6
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.7e-293 1011.9 806 67.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.0e-292 1010.0 785 68.7
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 2.8e-290 1001.9 785 69.0
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.7e-287 992.6 845 65.0
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 6.0e-285 984.2 786 66.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.0e-284 983.4 797 65.2
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 6.9e-281 970.7 794 67.5
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 8.4e-279 963.8 807 63.8
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.7e-274 948.3 787 66.1
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.2e-266 920.6 716 71.2
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.4e-260 903.3 793 62.2
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 6.7e-260 901.0 813 60.4
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.1e-257 891.7 801 58.4
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 4.5e-256 888.3 818 59.3
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-237 826.6 637 68.9
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.5e-230 802.7 651 66.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.1e-213 746.5 480 80.8
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.4e-212 743.8 801 51.2
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.1e-192 676.8 851 46.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.1e-192 676.8 851 46.4
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 3.2e-185 652.9 875 45.1
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.1e-181 638.3 850 45.8
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.6e-179 631.7 620 57.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.8e-172 610.5 531 63.7
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.3e-172 609.0 654 52.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 5.3e-172 609.0 459 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.2e-169 599.7 832 44.1
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.2e-163 581.3 434 69.6
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 2.9e-162 576.6 598 54.8
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.1e-144 517.3 404 71.0
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 6.3e-117 426.0 606 45.9
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-108 398.3 616 44.5
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.5e-91 340.5 212 82.1
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 6.2e-80 303.1 212 74.5
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.1e-79 302.4 768 31.6
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 6.8e-79 299.7 290 58.3
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.4e-76 292.0 197 76.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-76 291.2 197 76.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-76 291.2 197 76.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 6.8e-71 273.1 211 67.8
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-67 260.8 478 40.2
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.6e-64 251.9 236 59.7
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.0e-59 233.4 509 36.0
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.0e-54 218.4 121 84.3
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 7.1e-52 209.9 805 28.8
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.0e-50 206.1 131 80.9
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.0e-43 180.3 203 51.2
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.6e-41 172.9 87 87.4
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.6e-41 172.9 87 87.4
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.3e-40 172.6 92 87.0
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.1e-39 167.5 360 33.1
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 2.2e-32 145.2 142 54.2
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-30 139.4 130 56.9
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 5.1e-26 124.0 89 65.2
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 5.7e-25 120.6 75 85.3
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-23 115.5 107 55.1
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.0e-22 112.1 71 74.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-22 111.3 74 73.0
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.6e-19 102.4 113 45.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.1e-19 102.1 118 47.5
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 4.7e-19 100.9 57 91.2
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.0e-18 98.2 126 47.6
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.4e-15 88.6 59 69.5
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-13 82.8 108 48.1
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.9e-12 79.0 78 57.7
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.6e-11 74.7 75 53.3
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.8e-10 72.4 52 73.1
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 6.7e-10 70.5 77 51.9
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-09 69.7 246 29.7
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 4.4e-09 67.8 52 69.2
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 9.7e-09 66.6 51 70.6
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.3e-08 66.2 76 52.6
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.7e-08 65.9 65 60.0
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 7.7e-06 57.0 123 39.0


User provided reference genes

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