Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 0.0e+00 1414.8 851 100.0
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 5.7e-225 785.0 850 64.9
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 3.5e-222 775.8 856 63.3
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.2e-219 767.3 832 64.8
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.3e-216 757.3 816 65.3
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 1.7e-216 756.9 815 65.3
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 4.7e-211 738.8 805 65.3
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.4e-210 737.3 855 61.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 4.8e-208 728.8 864 61.2
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 6.3e-208 728.4 863 61.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 5.0e-205 718.8 847 62.6
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 1.7e-200 703.7 850 60.6
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 2.8e-200 703.0 842 62.0
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 6.3e-200 701.8 834 60.2
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 5.4e-199 698.7 869 61.1
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 7.0e-199 698.4 701 69.5
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 9.2e-199 698.0 848 61.8
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.5e-196 689.9 851 60.9
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.4e-194 684.1 850 60.7
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 9.8e-193 677.9 795 61.9
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 2.9e-192 676.4 842 59.3
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 4.9e-192 675.6 849 59.8
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 2.4e-191 673.3 697 67.7
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 3.5e-190 669.5 851 59.3
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 6.6e-189 665.2 831 60.8
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 5.6e-188 662.1 857 57.4
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 3.6e-187 659.4 794 60.8
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 1.4e-186 657.5 849 60.0
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 1.4e-186 657.5 770 60.1
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 2.0e-185 653.7 777 54.8
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 2.0e-185 653.7 827 59.1
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 5.8e-185 652.1 853 56.4
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 9.8e-185 651.4 861 56.3
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.1e-183 647.9 827 59.0
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 4.1e-183 646.0 789 60.3
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.2e-182 644.4 788 59.9
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 2.1e-182 643.7 867 51.3
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 3.5e-182 642.9 854 56.4
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 2.3e-181 640.2 783 58.1
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 2.3e-181 640.2 783 58.1
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 3.3e-180 636.3 852 55.5
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 3.3e-180 636.3 852 55.5
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 2.8e-179 633.3 853 55.1
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 3.1e-178 629.8 747 59.3
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 4.0e-178 629.4 822 52.8
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 4.4e-177 625.9 795 60.3
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.3e-176 624.4 805 57.8
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.7e-176 624.0 852 58.3
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.7e-176 622.9 843 57.8
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 4.9e-176 622.5 826 56.8
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 1.4e-175 620.9 852 55.8
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 2.4e-175 620.2 783 51.2
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 5.4e-175 619.0 904 48.0
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 7.1e-175 618.6 758 59.4
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 2.7e-174 616.7 783 51.1
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 7.8e-174 615.1 850 56.9
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 1.0e-173 614.8 817 57.8
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 1.3e-173 614.4 741 60.9
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.5e-172 610.9 772 58.3
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 2.5e-172 610.1 812 57.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 2.5e-172 610.1 807 57.4
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 7.3e-172 608.6 762 57.5
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 9.5e-172 608.2 849 50.4
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.6e-171 607.4 833 56.3
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 2.8e-171 606.7 824 55.7
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.1e-170 604.7 802 51.7
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 4.0e-170 602.8 861 53.1
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.5e-169 600.9 869 48.3
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 7.6e-169 598.6 757 58.8
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 1.0e-165 588.2 834 55.2
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 3.0e-165 586.6 781 58.1
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.3e-163 581.3 839 55.1
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 2.1e-163 580.5 763 57.7
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 2.8e-163 580.1 846 55.3
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 9.9e-161 571.6 799 54.7
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 3.5e-158 563.1 851 53.8
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 6.0e-158 562.4 809 55.5
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 6.0e-158 562.4 775 55.4
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 3.9e-157 559.7 807 55.6
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 5.1e-157 559.3 812 54.2
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 6.6e-157 558.9 876 47.6
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.8e-154 550.8 842 49.6
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 3.9e-149 533.1 843 52.2
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.6e-139 501.1 778 40.1
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 1.9e-135 487.6 589 65.7
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 1.4e-122 444.9 772 49.1
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 3.4e-121 440.3 818 41.1
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 1.3e-112 411.8 802 45.5
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 6.1e-110 402.9 529 63.5
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 7.2e-103 379.4 407 73.7
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 4.1e-98 363.6 567 49.6
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 8.6e-88 329.3 531 59.1
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 4.0e-85 320.5 655 33.6
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 4.4e-84 317.0 360 64.2
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 6.4e-75 286.6 291 54.0
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.3e-72 278.9 821 40.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 4.1e-66 257.3 757 39.9
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.3e-64 251.5 819 38.5
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 9.3e-50 203.0 513 36.1
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 2.1e-49 201.8 225 52.4
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 7.3e-47 193.4 226 50.4
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 3.2e-42 177.9 314 51.6
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 7.1e-26 123.6 129 55.8
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 3.5e-25 121.3 179 40.2
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 5.3e-21 107.5 164 40.2
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 7.9e-17 93.6 105 45.7
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 2.8e-14 85.1 74 58.1
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 8.5e-11 73.6 188 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1566 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-07 62.0 197 21.3
AagrBONN_evm.TU.Sc2ySwM_362.1977 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 157 27.4
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 1.3e-06 59.7 211 23.7
Hma1.2p1_2760F.1_g328070 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.7e-06 59.3 175 23.4


User provided reference genes

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