Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 4141.7 2092 100.0
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 3039.6 2241 70.9
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2790.8 2237 65.3
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2781.1 2237 65.1
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2764.9 2242 65.0
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2742.6 2251 64.6
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2736.1 2239 64.4
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2729.1 2243 64.5
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2685.6 2242 63.7
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2684.8 2242 63.7
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2667.9 2241 62.7
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2665.2 2245 63.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2660.2 2248 63.1
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2639.0 2249 62.3
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2605.9 2246 61.9
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2604.3 2250 61.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2603.5 2243 62.1
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2598.5 2248 62.1
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2590.8 2247 61.7
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2572.0 2249 61.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2567.0 2248 61.1
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2561.2 2234 61.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2553.5 2234 61.3
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2546.9 2261 60.7
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2515.7 2245 60.2
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2515.7 2245 60.2
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2512.6 2233 59.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2486.1 2229 59.7
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2472.6 2236 58.7
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2463.0 2254 58.9
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2450.6 2248 58.8
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2446.0 2247 58.7
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2443.7 2241 58.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2434.1 2253 58.6
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2427.9 2245 58.8
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2417.1 2246 58.1
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2413.3 2252 58.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2405.6 2224 58.3
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2399.0 2245 58.0
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2398.6 2241 57.7
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2374.7 2255 57.3
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2371.7 2248 57.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2370.9 2241 57.8
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2369.7 2237 58.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2359.7 2251 56.8
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2358.2 2237 57.2
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2357.4 2245 56.5
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2340.8 2248 56.5
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2332.8 2244 55.8
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2330.8 2252 56.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2328.9 2250 56.5
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2326.2 2268 56.5
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2320.8 2235 56.2
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2318.5 2239 55.6
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2308.5 2250 55.6
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2306.9 2256 55.9
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2297.7 2228 56.9
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2297.7 2228 56.9
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2297.7 2238 55.2
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2297.3 2237 57.1
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2294.2 2242 56.5
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2293.8 1826 65.9
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2289.6 2231 56.8
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2288.8 2232 56.9
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2288.8 2232 56.9
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2288.1 2242 56.2
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2286.1 2237 55.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2283.8 2234 56.6
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2280.0 2234 56.7
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2280.0 2226 55.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2273.4 2242 56.1
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2267.7 2229 56.3
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2267.3 2265 55.2
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2260.3 2233 56.3
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2260.3 2286 55.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2226.4 2250 54.7
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2216.0 1903 62.2
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2206.0 1827 63.4
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2164.0 2252 53.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2162.1 2231 55.0
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2148.6 2315 52.4
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2143.6 1828 62.9
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2112.0 2248 53.1
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2104.3 2063 56.8
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2072.4 1716 64.1
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1952.6 2336 48.2
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1913.7 2231 49.1
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1893.2 2108 51.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1884.4 2258 47.9
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1680.2 1435 63.3
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1573.5 2391 41.1
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1475.7 1234 63.5
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1377.1 1702 47.0
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1372.1 2057 42.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1350.5 1202 59.6
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1328.5 2366 37.7
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1237.2 2391 35.7
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1206.0 2237 36.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1188.3 1058 59.5
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1095.1 1134 54.9
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1083.6 1026 57.6
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 1.4e-311 1074.7 849 67.4
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.1e-272 944.9 799 63.5
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 3.2e-261 906.7 922 55.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.6e-260 904.4 1366 42.9
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 4.9e-254 882.9 870 54.9
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.3e-226 790.4 743 57.9
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.1e-220 769.6 1375 37.1
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.1e-212 744.6 3070 25.9
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 2.8e-193 681.0 1009 43.0
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 5.4e-152 543.9 453 61.6
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 2.4e-115 422.2 2470 23.7
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.9e-110 404.8 384 58.3
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.0e-78 300.4 326 49.4
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.6e-74 286.6 288 56.6
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 8.0e-71 274.2 312 48.1
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 8.0e-71 274.2 765 30.6
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 5.2e-62 245.0 241 53.5
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-61 243.8 324 43.2
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.3e-52 213.8 179 65.4
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-51 210.3 236 47.9
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 4.0e-46 192.2 280 40.4
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.3e-39 170.6 138 63.8
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-37 164.1 226 42.9
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.6e-37 161.4 491 27.3
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.2e-34 154.1 95 80.0
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 9.3e-27 127.9 146 48.6
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.6e-26 127.1 244 36.1
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.7e-26 126.3 102 61.8
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 7.9e-26 124.8 108 63.0
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.4e-16 91.7 108 42.6
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.9e-11 77.0 443 24.6
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.2e-11 76.3 47 74.5


User provided reference genes

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