Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 2.5e-47 191.8 98 100.0
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 2.9e-24 115.2 89 65.2
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 3.2e-23 111.7 93 63.4
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 7.2e-23 110.5 70 75.7
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 7.2e-23 110.5 70 75.7
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 1.2e-22 109.8 70 74.3
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 2.7e-22 108.6 70 71.4
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 6.1e-22 107.5 70 71.4
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 6.1e-22 107.5 87 63.2
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 8.0e-22 107.1 70 72.9
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.4e-21 106.3 70 70.0
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 1.4e-21 106.3 70 71.4
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.0e-21 104.8 77 64.9
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 4.0e-21 104.8 70 71.4
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 6.7e-21 104.0 69 66.7
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 2.0e-20 102.4 69 68.1
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 2.6e-20 102.1 68 73.5
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 7.4e-20 100.5 70 71.4
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 1.7e-19 99.4 69 68.1
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.2e-19 99.0 69 69.6
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.7e-19 98.2 68 67.6
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.8e-19 97.8 68 66.2
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 4.8e-19 97.8 70 64.3
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 6.3e-19 97.4 70 67.1
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 8.2e-19 97.1 61 73.8
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.4e-18 96.3 68 66.2
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.4e-18 96.3 67 67.2
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 1.4e-18 96.3 68 69.1
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.4e-18 95.5 70 67.1
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 2.4e-18 95.5 70 67.1
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 3.1e-18 95.1 70 65.7
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 7.0e-18 94.0 70 62.9
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 7.0e-18 94.0 70 62.9
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 7.0e-18 94.0 97 53.6
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 7.0e-18 94.0 70 58.6
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 7.0e-18 94.0 72 59.7
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 9.1e-18 93.6 70 65.7
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 9.1e-18 93.6 68 64.7
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 2.0e-17 92.4 68 57.4
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.6e-17 92.0 68 63.2
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.2e-16 89.0 68 64.7
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.2e-16 89.0 68 64.7
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 3.8e-16 88.2 70 61.4
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 6.5e-16 87.4 70 61.4
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 6.5e-16 87.4 70 61.4
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-15 86.7 67 65.7
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.1e-15 86.7 70 60.0
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.9e-15 85.9 60 65.0
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 2.5e-15 85.5 70 62.9
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 2.5e-15 85.5 66 59.1
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 3.2e-15 85.1 67 64.2
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 5.5e-15 84.3 68 60.3
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 9.4e-15 83.6 70 57.1
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 4.7e-14 81.3 70 58.6
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 4.7e-14 81.3 68 57.4
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 1.8e-13 79.3 66 56.1
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 5.2e-13 77.8 61 60.7
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 5.2e-13 77.8 70 52.9
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 5.2e-13 77.8 67 56.7
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 2.0e-12 75.9 66 54.5
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 3.4e-12 75.1 70 52.9
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 5.7e-12 74.3 66 54.5
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.3e-11 73.2 71 52.1
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.3e-11 73.2 71 52.1
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 2.2e-11 72.4 67 53.7
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.2e-11 72.4 71 52.1
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 3.7e-11 71.6 68 55.9
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 8.3e-11 70.5 53 60.4
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.1e-10 70.1 65 53.8
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 1.8e-10 69.3 74 52.7
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 2.4e-10 68.9 68 48.5
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 4.1e-10 68.2 66 50.0
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 7.0e-10 67.4 70 47.1
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 1.2e-09 66.6 72 50.0
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 1.6e-09 66.2 70 51.4
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 2.2e-08 62.4 65 44.6
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 2.2e-08 62.4 74 43.2
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 3.8e-08 61.6 60 45.0
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 2.5e-07 58.9 56 51.8
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 4.2e-07 58.2 68 44.1


User provided reference genes

Program Settings