Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.9e-35 151.4 78 100.0
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 4.0e-32 141.0 78 94.9
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.7e-19 99.0 70 72.9
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 3.8e-19 97.8 78 65.4
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 5.0e-19 97.4 78 66.7
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 8.6e-19 96.7 71 71.8
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.1e-18 96.3 72 70.8
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.1e-18 96.3 72 70.8
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 1.1e-18 96.3 78 66.7
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 3.3e-18 94.7 78 64.1
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 5.5e-18 94.0 66 75.8
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 5.5e-18 94.0 66 75.8
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.5e-18 94.0 78 64.1
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 5.5e-18 94.0 66 74.2
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 7.2e-18 93.6 66 74.2
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.2e-17 92.8 63 74.6
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.2e-17 92.8 78 64.1
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.1e-17 92.0 66 74.2
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.1e-17 92.0 66 71.2
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 3.6e-17 91.3 66 71.2
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 4.7e-17 90.9 64 70.3
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 6.1e-17 90.5 65 75.4
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 6.1e-17 90.5 68 66.2
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 6.1e-17 90.5 66 69.7
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 8.0e-17 90.1 64 75.0
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 8.0e-17 90.1 66 69.7
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.4e-16 89.4 66 71.2
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 1.8e-16 89.0 66 71.2
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 1.8e-16 89.0 65 69.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 2.3e-16 88.6 69 66.7
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 3.0e-16 88.2 64 68.8
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 4.0e-16 87.8 63 73.0
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 5.2e-16 87.4 60 76.7
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 5.2e-16 87.4 59 76.3
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 5.2e-16 87.4 78 60.3
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 6.8e-16 87.0 64 70.3
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 8.9e-16 86.7 78 60.3
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 8.9e-16 86.7 78 60.3
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 8.9e-16 86.7 66 66.7
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 8.9e-16 86.7 78 59.0
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 8.9e-16 86.7 64 71.9
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.2e-15 86.3 66 65.2
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.2e-15 86.3 58 77.6
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 1.2e-15 86.3 64 70.3
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 1.5e-15 85.9 60 75.0
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 2.0e-15 85.5 78 59.0
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 2.0e-15 85.5 78 59.0
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 2.0e-15 85.5 63 68.3
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 2.6e-15 85.1 66 66.7
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 2.6e-15 85.1 60 76.7
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 4.4e-15 84.3 76 55.3
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 5.7e-15 84.0 78 57.7
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 5.7e-15 84.0 59 74.6
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.3e-14 82.8 66 63.6
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.3e-14 82.8 62 67.7
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 1.3e-14 82.8 66 66.7
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.3e-14 82.8 76 56.6
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.7e-14 82.4 66 62.1
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.7e-14 82.4 76 56.6
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 2.2e-14 82.0 69 62.3
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 2.2e-14 82.0 60 73.3
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 2.2e-14 82.0 75 60.0
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.9e-14 81.6 61 68.9
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 2.9e-14 81.6 58 70.7
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 3.7e-14 81.3 76 55.3
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 6.3e-14 80.5 69 60.9
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 6.3e-14 80.5 60 71.7
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 8.3e-14 80.1 60 70.0
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 1.1e-13 79.7 69 60.9
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.1e-13 79.7 76 55.3
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.4e-13 79.3 78 56.4
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 1.4e-13 79.3 55 78.2
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 2.4e-13 78.6 55 74.5
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 2.4e-13 78.6 66 62.1
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 9.2e-13 76.6 66 59.1
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.7e-12 75.1 64 65.6
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.7e-12 75.1 66 59.1
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.3e-11 72.8 68 57.4
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 1.7e-11 72.4 67 61.2
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 6.6e-11 70.5 47 70.2
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 8.6e-11 70.1 59 59.3
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 1.1e-10 69.7 45 75.6
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.1e-10 69.7 60 61.7
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.9e-10 68.9 48 68.8
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 4.3e-10 67.8 45 71.1
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 4.3e-10 67.8 51 66.7
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 5.6e-10 67.4 67 50.7
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 5.6e-10 67.4 45 75.6
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.2e-09 66.2 56 58.9
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.2e-09 66.2 56 58.9
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 1.6e-09 65.9 59 54.2
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 1.4e-08 62.8 45 71.1
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 1.8e-08 62.4 39 76.9
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 2.3e-08 62.0 63 52.4
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 3.1e-08 61.6 45 64.4
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.2e-08 60.8 45 62.2
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 6.8e-08 60.5 82 48.8
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 6.8e-08 60.5 63 49.2
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 2.6e-07 58.5 56 53.6
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 2.9e-06 55.1 64 56.2


User provided reference genes

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