Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 3.0e-57 224.9 114 100.0
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 9.3e-14 80.5 97 52.6
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.2e-13 80.1 99 52.5
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.6e-13 79.7 92 58.7
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.3e-12 76.6 104 50.0
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 3.0e-12 75.5 102 50.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.9e-12 75.1 98 50.0
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 5.1e-12 74.7 89 55.1
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 1.1e-11 73.6 104 46.2
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 4.3e-11 71.6 101 48.5
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.3e-11 71.6 67 58.2
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 9.6e-11 70.5 93 50.5
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 2.1e-10 69.3 102 46.1
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 2.8e-10 68.9 82 53.7
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 3.6e-10 68.6 92 50.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.2e-10 67.8 83 51.8
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 8.1e-10 67.4 95 44.2
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.1e-09 67.0 105 44.8
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.1e-09 67.0 91 51.6
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 1.1e-09 67.0 96 45.8
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.1e-09 67.0 86 45.3
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 1.8e-09 66.2 92 48.9
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.8e-09 66.2 103 48.5
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.8e-09 66.2 102 47.1
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.4e-09 65.9 102 47.1
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.4e-09 65.9 106 43.4
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 3.1e-09 65.5 77 55.8
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 3.1e-09 65.5 83 53.0
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 4.0e-09 65.1 113 45.1
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 4.0e-09 65.1 113 45.1
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 4.0e-09 65.1 113 45.1
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 4.0e-09 65.1 113 45.1
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 4.0e-09 65.1 97 46.4
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 5.3e-09 64.7 91 49.5
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 5.3e-09 64.7 91 49.5
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 5.3e-09 64.7 91 49.5
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 5.3e-09 64.7 91 49.5
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 5.3e-09 64.7 91 49.5
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 6.9e-09 64.3 112 43.8
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 6.9e-09 64.3 102 43.1
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.9e-09 64.3 65 56.9
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 6.9e-09 64.3 75 53.3
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 9.0e-09 63.9 113 44.2
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 9.0e-09 63.9 91 47.3
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 9.0e-09 63.9 56 64.3
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.2e-08 63.5 84 48.8
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.2e-08 63.5 84 48.8
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.2e-08 63.5 98 45.9
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.2e-08 63.5 100 48.0
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.2e-08 63.5 105 43.8
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.0e-08 62.8 105 40.0
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.0e-08 62.8 84 48.8
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.0e-08 62.8 96 43.8
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 2.6e-08 62.4 63 58.7
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 2.6e-08 62.4 84 51.2
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 3.4e-08 62.0 76 52.6
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 4.5e-08 61.6 63 58.7
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 5.8e-08 61.2 80 48.8
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 7.6e-08 60.8 54 63.0
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.6e-08 60.8 84 47.6
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 7.6e-08 60.8 108 45.4
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 7.6e-08 60.8 87 49.4
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 9.9e-08 60.5 61 59.0
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 9.9e-08 60.5 85 48.2
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.3e-07 60.1 64 56.2
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.3e-07 60.1 81 53.1
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.2e-07 59.3 93 45.2
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 3.8e-07 58.5 95 43.2
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 3.8e-07 58.5 50 60.0
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 3.8e-07 58.5 86 43.0
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 3.8e-07 58.5 64 57.8
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.9e-07 58.2 93 41.9
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.9e-07 58.2 93 41.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 4.9e-07 58.2 93 41.9
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.4e-07 57.8 83 43.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 6.4e-07 57.8 100 46.0
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.4e-07 57.8 59 55.9
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 8.4e-07 57.4 94 42.6
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 8.4e-07 57.4 55 65.5
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 8.4e-07 57.4 55 65.5
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.1e-06 57.0 64 51.6
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.1e-06 57.0 64 51.6
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.4e-06 56.6 88 50.0
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.4e-06 56.6 79 49.4
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 1.4e-06 56.6 89 44.9
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.4e-06 56.6 97 41.2
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.9e-06 56.2 41 65.9
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.9e-06 56.2 41 65.9
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.9e-06 56.2 58 58.6
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 2.4e-06 55.8 45 60.0
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.4e-06 55.8 89 42.7
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 2.4e-06 55.8 88 45.5
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.4e-06 55.8 79 44.3
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.4e-06 55.8 94 42.6
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 4.2e-06 55.1 56 53.6
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 4.2e-06 55.1 59 59.3
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 4.2e-06 55.1 59 59.3
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 5.5e-06 54.7 78 46.2
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 5.5e-06 54.7 41 70.7
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 7.1e-06 54.3 78 46.2
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 7.1e-06 54.3 69 47.8
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 7.1e-06 54.3 62 53.2
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 9.3e-06 53.9 73 43.8
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 9.3e-06 53.9 83 43.4
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 9.3e-06 53.9 94 46.8
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 9.3e-06 53.9 97 39.2


User provided reference genes

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