Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010669m.g Citrus clementina HOM05D003111 ORTHO05D003502 4.6e-55 217.6 107 100.0
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 2.6e-10 68.9 123 43.1
Atru.chr7.1340 Acer truncatum HOM05D003111 ORTHO05D003502 3.4e-10 68.6 116 44.8
Prupe.7G229800 Prunus persica HOM05D003111 ORTHO05D003502 4.5e-10 68.2 116 44.8
TWI34G0805 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 1.7e-09 66.2 117 38.5
PGR102G1781 Punica granatum HOM05D003111 ORTHO05D003502 2.9e-09 65.5 116 38.8
TWI63G0670 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 2.9e-09 65.5 112 39.3
Gohir.A06G061800 Gossypium hirsutum HOM05D003111 ORTHO05D003502 6.5e-09 64.3 116 40.5
Gorai.010G069900 Gossypium raimondii HOM05D003111 ORTHO05D003502 6.5e-09 64.3 116 40.5
RcHm_v2.0_Chr2g0090601 Rosa chinensis HOM05D003111 ORTHO05D003502 8.4e-09 63.9 115 42.6
FvH4_1g04970 Fragaria vesca HOM05D003111 ORTHO05D003502 1.4e-08 63.2 112 41.1
FAN26G2332 Fragaria x ananassa HOM05D003111 ORTHO05D003502 1.4e-08 63.2 112 41.1
CSS0043759 Camellia sinensis var. sinensis HOM05D003111 ORTHO05D003502 1.9e-08 62.8 117 41.0
THA.LOC104808757 Tarenaya hassleriana HOM05D003111 ORTHO05D003502 1.9e-08 62.8 117 39.3
FAN23G2657 Fragaria x ananassa HOM05D003111 ORTHO05D003502 3.2e-08 62.0 115 40.0
Gohir.D06G060100 Gossypium hirsutum HOM05D003111 ORTHO05D003502 4.2e-08 61.6 116 40.5
AT4G13270 Arabidopsis thaliana HOM05D003111 ORTHO05D003502 5.5e-08 61.2 118 39.0
FAN19G2262 Fragaria x ananassa HOM05D003111 ORTHO05D003502 5.5e-08 61.2 112 40.2
Thecc.09G111600 Theobroma cacao HOM05D003111 ORTHO05D003502 5.5e-08 61.2 119 39.5
AL9U10480 Arabidopsis lyrata HOM05D003111 ORTHO05D003502 9.3e-08 60.5 118 38.1
Carub.0007s2934 Capsella rubella HOM05D003111 ORTHO05D003502 1.2e-07 60.1 118 36.4
Haze_25707 Corylus avellana HOM05D003111 ORTHO05D003502 1.6e-07 59.7 114 41.2
MD02G1048400 Malus domestica HOM05D003111 ORTHO05D003502 1.6e-07 59.7 119 38.7
CANSAT56G2727 Cannabis sativa HOM05D003111 ORTHO05D003502 2.1e-07 59.3 115 39.1
Cpa.g.sc451.3 Carica papaya HOM05D003111 ORTHO05D003502 2.1e-07 59.3 116 39.7
Manes.03G019600 Manihot esculenta HOM05D003111 ORTHO05D003502 2.1e-07 59.3 116 38.8
THA.LOC104804584 Tarenaya hassleriana HOM05D003111 ORTHO05D003502 2.1e-07 59.3 119 37.8
EL10Ac8g18506 Beta vulgaris HOM05D003111 ORTHO05D003502 1.3e-06 56.6 115 39.1
CARHR218820 Cardamine hirsuta HOM05D003111 ORTHO05D003502 1.8e-06 56.2 41 63.4
BcaB01g01534 Brassica carinata HOM05D003111 ORTHO05D003502 3.0e-06 55.5 122 36.9
BcaC07g37385 Brassica carinata HOM05D003111 ORTHO05D003502 3.0e-06 55.5 113 37.2
C08p08540 Brassica napus HOM05D003111 ORTHO05D003502 3.0e-06 55.5 113 37.2
BolC8t47693H Brassica oleracea HOM05D003111 ORTHO05D003502 3.0e-06 55.5 113 37.2
Thhalv10026222m.g Eutrema salsugineum HOM05D003111 ORTHO05D003502 3.0e-06 55.5 119 39.5
A08p07040 Brassica napus HOM05D003111 ORTHO05D003502 3.9e-06 55.1 113 37.2
BraA08t32715Z Brassica rapa HOM05D003111 ORTHO05D003502 3.9e-06 55.1 113 37.2
Sp7g10860 Schrenkiella parvula HOM05D003111 ORTHO05D003502 3.9e-06 55.1 119 38.7
Aa31sc99G30 Aethionema arabicum HOM05D003111 ORTHO05D003502 6.7e-06 54.3 113 36.3
Gohir.D07G005200 Gossypium hirsutum HOM05D003111 ORTHO05D003502 6.7e-06 54.3 41 61.0
Gorai.001G004800 Gossypium raimondii HOM05D003111 ORTHO05D003502 6.7e-06 54.3 41 61.0
MD15G1186800 Malus domestica HOM05D003111 ORTHO05D003502 6.7e-06 54.3 111 36.9
Rhsim03G0243600 Rhododendron simsii HOM05D003111 ORTHO05D003502 6.7e-06 54.3 41 63.4
Sc18g0001150 Simmondsia chinensis HOM05D003111 ORTHO05D003502 6.7e-06 54.3 98 40.8


User provided reference genes

Program Settings