Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 2.6e-161 572.0 296 100.0
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 3.8e-128 461.8 314 74.5
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 2.8e-126 455.7 312 74.0
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 1.4e-125 453.4 315 74.0
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 1.2e-124 450.3 312 72.8
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 4.4e-124 448.4 321 72.3
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 5.7e-124 448.0 315 71.7
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 5.7e-124 448.0 315 71.7
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 5.7e-124 448.0 311 72.0
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 2.9e-123 445.7 315 71.4
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.1e-122 443.7 311 73.0
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.4e-122 443.4 311 72.3
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 2.4e-122 442.6 311 71.7
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 1.6e-121 439.9 312 71.2
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 2.7e-121 439.1 311 71.4
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 2.7e-121 439.1 312 71.2
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 3.5e-121 438.7 315 70.8
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 1.7e-120 436.4 312 70.5
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 2.3e-120 436.0 317 69.1
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 5.0e-120 434.9 314 71.3
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 5.0e-120 434.9 315 71.1
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 1.5e-119 433.3 310 70.6
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 1.2e-118 430.3 312 70.2
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 1.6e-118 429.9 310 69.7
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 1.6e-118 429.9 312 70.2
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 1.6e-118 429.9 309 69.3
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 2.8e-118 429.1 310 70.3
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 4.7e-118 428.3 282 75.9
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 1.4e-117 426.8 311 67.5
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 2.3e-117 426.0 312 68.3
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 3.1e-117 425.6 311 69.1
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 4.0e-117 425.2 314 68.5
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 4.0e-117 425.2 316 68.4
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 1.5e-116 423.3 311 68.2
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 2.6e-116 422.5 322 66.8
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 3.4e-116 422.2 322 67.4
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 4.4e-116 421.8 323 66.3
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 7.5e-116 421.0 324 66.4
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 7.5e-116 421.0 314 68.2
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 7.5e-116 421.0 313 68.1
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 1.7e-115 419.9 322 65.8
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 1.7e-115 419.9 323 66.3
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 1.7e-115 419.9 322 66.5
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 2.2e-115 419.5 322 66.8
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 2.2e-115 419.5 322 66.8
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 8.3e-115 417.5 322 65.8
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 2.4e-114 416.0 302 69.2
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 2.4e-114 416.0 312 67.6
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 1.2e-113 413.7 314 67.5
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 4.6e-113 411.8 328 65.2
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 8.6e-112 407.5 323 65.0
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.1e-111 407.1 305 66.6
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 1.9e-111 406.4 311 69.8
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 2.5e-111 406.0 305 66.6
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 1.2e-110 403.7 301 68.4
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 3.6e-110 402.1 312 66.7
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.4e-109 400.2 306 66.0
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 1.4e-109 400.2 312 66.0
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 2.3e-109 399.4 333 63.4
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 6.8e-109 397.9 354 60.2
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 5.8e-108 394.8 312 65.4
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 7.5e-108 394.4 313 63.3
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 7.5e-108 394.4 308 65.3
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 8.3e-107 391.0 313 62.6
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 1.4e-106 390.2 309 62.1
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 2.4e-106 389.4 296 67.9
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 3.2e-106 389.0 292 67.5
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 7.1e-106 387.9 303 65.3
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 9.2e-106 387.5 312 63.1
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 2.1e-105 386.3 302 65.6
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 2.1e-105 386.3 312 64.4
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 1.3e-104 383.6 310 61.9
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 3.9e-104 382.1 271 73.4
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 6.6e-104 381.3 312 61.5
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 8.6e-104 380.9 319 60.8
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 1.2e-102 377.1 300 64.0
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 1.2e-102 377.1 297 65.3
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 1.5e-100 370.2 312 61.2
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 2.9e-99 365.9 311 62.4
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.1e-98 364.0 305 62.3
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 8.6e-96 354.4 332 58.4
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 7.6e-92 341.3 288 63.5
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 1.7e-88 330.1 313 58.5
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 1.7e-88 330.1 311 57.9
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 5.6e-87 325.1 268 64.6
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 5.6e-87 325.1 268 64.6
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 4.8e-86 322.0 257 65.0
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 1.8e-80 303.5 176 83.5
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 2.3e-80 303.1 199 73.4
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 1.4e-77 293.9 242 62.0
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 1.3e-75 287.3 229 62.4
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 1.2e-73 280.8 318 45.6
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 3.5e-73 279.3 194 70.1
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 8.7e-72 274.6 256 59.0
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 1.5e-71 273.9 282 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 1.6e-70 270.4 311 45.0
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 3.1e-69 266.2 203 66.0
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 8.4e-67 258.1 309 43.7
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.4e-66 257.3 309 43.7
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 1.9e-63 246.9 301 49.8
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 7.2e-58 228.4 268 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 4.6e-57 225.7 307 38.8
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 9.7e-55 218.0 229 51.1
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 1.7e-51 207.2 342 37.1
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 7.4e-39 165.2 145 59.3
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 2.1e-33 147.1 196 44.4
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 8.0e-33 145.2 103 68.9
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 8.2e-30 135.2 127 57.5
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 5.0e-27 125.9 74 73.0
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 2.1e-25 120.6 129 51.2
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 1.2e-23 114.8 87 62.1
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 4.1e-21 106.3 69 76.8
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 2.7e-20 103.6 205 36.6
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 4.0e-16 89.7 62 67.7
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 1.6e-09 67.8 70 48.6
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 7.5e-07 58.9 40 65.0
ECA233G3510 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.7e-06 56.6 43 55.8
MELO3C033367.2 Cucumis melo HOM05D006919 ORTHO05D170968 8.3e-06 55.5 46 63.0


User provided reference genes

Program Settings