Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.6e-83 311.6 166 100.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 9.9e-57 223.8 133 78.2
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 7.1e-55 217.6 133 77.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 9.3e-55 217.2 136 77.2
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.6e-53 211.1 141 70.9
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.1e-52 210.3 169 62.1
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.9e-52 209.5 139 71.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 9.6e-52 207.2 141 71.6
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.8e-51 205.7 129 74.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-50 203.0 125 77.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-50 203.0 125 77.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.2e-49 200.3 131 74.8
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.4e-49 198.4 133 74.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.2e-48 196.1 175 61.7
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.9e-48 195.7 120 75.8
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 5.4e-47 191.4 159 67.9
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.6e-46 189.9 160 66.2
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.7e-46 189.1 134 70.1
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 3.5e-46 188.7 131 71.0
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.0e-45 187.2 127 72.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.0e-45 187.2 129 69.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.0e-45 187.2 133 66.9
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.0e-45 187.2 136 66.2
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.3e-45 186.8 139 69.1
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.3e-45 186.8 136 69.9
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.1e-44 183.7 137 67.9
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.9e-44 183.0 128 70.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 7.3e-44 181.0 112 77.7
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.6e-43 179.9 166 56.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.1e-43 179.5 137 68.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.8e-43 179.1 133 67.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.2e-43 177.9 157 65.6
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.1e-43 177.6 165 59.4
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.1e-42 177.2 135 63.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.1e-42 175.6 132 68.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 4.0e-42 175.3 119 69.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.0e-42 175.3 130 65.4
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.0e-42 175.3 130 65.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.2e-41 173.7 124 62.9
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.5e-41 173.3 105 76.2
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 7.6e-41 171.0 131 65.6
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-40 170.2 129 64.3
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.9e-40 169.1 140 60.0
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.4e-40 167.9 133 65.4
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.1e-39 167.2 163 55.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-39 167.2 133 64.7
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-39 167.2 134 64.9
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.4e-39 166.8 129 63.6
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.4e-39 166.8 130 63.8
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.4e-39 166.0 124 63.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-39 166.0 133 64.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 7.1e-39 164.5 170 51.8
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.2e-38 163.7 115 67.8
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.2e-38 163.7 132 62.9
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-38 163.3 139 62.6
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 6.0e-38 161.4 153 55.6
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 7.9e-38 161.0 129 59.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 7.9e-38 161.0 129 59.7
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.3e-37 159.5 96 79.2
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 3.0e-37 159.1 129 58.9
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.9e-37 158.7 115 67.0
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.5e-36 156.8 126 64.3
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.5e-36 156.0 93 76.3
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.3e-36 155.2 138 58.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 7.4e-36 154.5 138 57.2
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 9.6e-36 154.1 126 61.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 9.6e-36 154.1 126 61.1
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.6e-35 153.3 137 59.9
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.1e-35 152.9 98 75.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.8e-35 152.5 123 61.8
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 2.8e-35 152.5 93 74.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.8e-35 152.5 88 76.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.7e-35 152.1 101 76.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.7e-35 152.1 113 68.1
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 4.8e-35 151.8 165 52.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.8e-34 149.8 126 59.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.8e-34 149.8 126 59.5
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 4.0e-34 148.7 125 60.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.6e-33 146.0 94 74.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 3.4e-33 145.6 98 70.4
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 7.6e-33 144.4 104 63.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.3e-32 143.7 124 60.5
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.2e-32 142.9 101 69.3
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.9e-32 142.5 109 64.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 3.8e-32 142.1 89 73.0
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 3.8e-32 142.1 146 54.1
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 8.4e-32 141.0 122 55.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.4e-31 140.2 124 61.3
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.9e-31 139.8 98 68.4
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.2e-31 139.0 144 52.1
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.2e-31 139.0 130 55.4
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.5e-31 138.3 205 42.4
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 9.3e-31 137.5 123 58.5
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.6e-30 136.7 89 70.8
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.0e-29 132.5 131 56.5
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-28 130.6 85 71.8
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 7.4e-28 127.9 92 68.5
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-27 126.7 92 67.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 6.2e-27 124.8 81 74.1
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 6.2e-27 124.8 79 79.7
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.6e-25 119.4 83 71.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.8e-25 118.2 82 78.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-24 117.5 131 50.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.7e-24 116.7 74 75.7
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 2.2e-24 116.3 143 49.0
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-23 113.6 67 80.6
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.4e-23 113.6 127 49.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 4.2e-23 112.1 129 48.8
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 4.2e-23 112.1 128 46.9
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.1e-22 109.8 78 70.5
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.1e-22 109.8 87 59.8
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.1e-22 108.2 72 75.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.8e-21 106.7 102 51.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.0e-21 105.9 93 55.9
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.9e-21 105.5 92 53.3
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 6.7e-21 104.8 106 59.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-20 103.6 85 52.9
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.3e-20 102.4 65 69.2
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-19 100.5 68 75.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.7e-19 99.0 80 57.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 4.8e-19 98.6 95 52.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 4.8e-19 98.6 95 52.6
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 8.2e-19 97.8 67 70.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.8e-18 96.7 163 38.7
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.3e-18 95.1 73 67.1
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.2e-17 94.0 61 72.1
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.2e-17 94.0 67 77.6
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.4e-17 92.4 87 59.8
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-16 90.9 133 48.1
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.3e-16 90.5 91 49.5
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 2.9e-16 89.4 136 44.1
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.8e-16 89.0 49 89.8
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.4e-15 87.0 86 50.0
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 4.2e-15 85.5 49 87.8
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.2e-14 84.0 115 42.6
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.1e-14 83.2 60 68.3
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.6e-14 82.4 67 64.2
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.6e-14 82.4 74 58.1
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.0e-13 80.9 133 42.1
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.0e-13 80.9 45 88.9
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.3e-13 79.7 48 87.5
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.9e-13 79.0 49 85.7
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 8.8e-13 77.8 64 57.8
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-12 77.4 42 88.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.5e-12 77.0 161 37.3
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.0e-12 76.6 99 46.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 2.5e-12 76.3 124 40.3
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 3.3e-12 75.9 119 39.5
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.7e-12 75.1 50 78.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 7.4e-12 74.7 48 72.9
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.7e-11 73.6 63 65.1
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.7e-11 73.6 98 41.8
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.2e-11 73.2 47 76.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.8e-11 72.8 112 38.4
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.8e-11 72.8 73 46.6
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 2.8e-11 72.8 42 83.3
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 8.2e-11 71.2 80 51.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-10 70.9 61 55.7
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.8e-10 70.1 68 63.2
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.8e-10 70.1 38 86.8
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.3e-10 68.6 126 34.1
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 6.9e-10 68.2 76 51.3
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-09 66.6 49 69.4
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.6e-09 66.2 49 67.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 2.6e-09 66.2 136 36.8
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 4.5e-09 65.5 50 58.0
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 1.0e-08 64.3 51 52.9
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.0e-08 64.3 47 72.3
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.9e-08 62.8 37 83.8
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 5.0e-08 62.0 97 43.3
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-07 60.8 46 65.2
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.9e-07 60.1 99 38.4
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 1.2e-06 57.4 59 49.2
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 1.6e-06 57.0 55 50.9
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 2.7e-06 56.2 72 41.7
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 3.6e-06 55.8 77 37.7
CiPaw.01G193600 Carya illinoinensis HOM05D002369 ORTHO05D002435 3.6e-06 55.8 73 42.5
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 4.7e-06 55.5 55 49.1
Sed0012249 Sechium edule HOM05D002369 ORTHO05D002435 4.7e-06 55.5 83 34.9
CsaV3_3G012780 Cucumis sativus L. HOM05D002369 ORTHO05D002435 6.1e-06 55.1 55 47.3
Oeu043467.1 Olea europaea HOM05D002369 ORTHO05D002435 6.1e-06 55.1 56 48.2
vmacro15392 Vaccinium macrocarpon HOM05D002369 ORTHO05D002435 6.1e-06 55.1 81 38.3
Duzib212G0042 Durio zibethinus HOM05D002369 ORTHO05D002435 7.9e-06 54.7 78 43.6


User provided reference genes

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