Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010490m.g Citrus clementina HOM05D001115 ORTHO05D011468 4.0e-111 404.8 211 100.0
Atru.chr7.2150 Acer truncatum HOM05D001115 ORTHO05D011468 1.1e-60 237.3 215 60.5
CiPaw.07G206500 Carya illinoinensis HOM05D001115 ORTHO05D011468 2.9e-53 212.6 207 54.6
Eucgr.C02896 Eucalyptus grandis HOM05D001115 ORTHO05D011468 1.0e-50 204.1 206 51.5
Thecc.09G040900 Theobroma cacao HOM05D001115 ORTHO05D011468 1.8e-50 203.4 206 52.9
Gohir.D06G095600 Gossypium hirsutum HOM05D001115 ORTHO05D011468 8.7e-50 201.1 207 53.6
Gorai.010G110100 Gossypium raimondii HOM05D001115 ORTHO05D011468 8.7e-50 201.1 207 53.6
MD15G1096800 Malus domestica HOM05D001115 ORTHO05D011468 1.1e-47 194.1 199 52.8
TWI34G1268 Tripterygium wilfordii HOM05D001115 ORTHO05D011468 2.6e-46 189.5 206 53.9
PGR044G2696 Punica granatum HOM05D001115 ORTHO05D011468 7.6e-46 188.0 188 52.1
QL12p026643 Quercus lobata HOM05D001115 ORTHO05D011468 2.7e-43 179.5 212 50.9
QL12p029602 Quercus lobata HOM05D001115 ORTHO05D011468 2.7e-43 179.5 212 50.9
Potri.006G241400 Populus trichocarpa HOM05D001115 ORTHO05D011468 1.8e-42 176.8 204 51.5
Cc08_g09090 Coffea canephora HOM05D001115 ORTHO05D011468 2.3e-42 176.4 197 46.2
Actinidia15732 Actinidia chinensis HOM05D001115 ORTHO05D011468 3.9e-42 175.6 192 51.6
FvH4_2g36010 Fragaria vesca HOM05D001115 ORTHO05D011468 8.7e-42 174.5 213 49.8
RcHm_v2.0_Chr6g0305861 Rosa chinensis HOM05D001115 ORTHO05D011468 3.3e-41 172.6 191 51.8
Potri.018G038400 Populus trichocarpa HOM05D001115 ORTHO05D011468 1.3e-40 170.6 204 50.0
MD08G1117200 Malus domestica HOM05D001115 ORTHO05D011468 4.8e-40 168.7 151 57.6
Dinv14233 Davidia involucrata HOM05D001115 ORTHO05D011468 5.9e-38 161.8 169 53.3
Gohir.A06G095500 Gossypium hirsutum HOM05D001115 ORTHO05D011468 1.4e-34 150.6 206 44.2
Prupe.1G451700 Prunus persica HOM05D001115 ORTHO05D011468 5.1e-34 148.7 155 54.8
GSVIVG01035661001 Vitis vinifera HOM05D001115 ORTHO05D011468 1.8e-31 140.2 148 50.7
Sabra18G0038800 Salix brachista HOM05D001115 ORTHO05D011468 1.2e-27 127.5 204 40.2
Nn3g18076 Nelumbo nucifera HOM05D001115 ORTHO05D011468 3.0e-26 122.9 192 39.6
Manes.03G061200 Manihot esculenta HOM05D001115 ORTHO05D011468 2.0e-25 120.2 195 43.1
Cc06_g18740 Coffea canephora HOM05D001115 ORTHO05D011468 7.4e-25 118.2 142 44.4
FAN15G0541 Fragaria x ananassa HOM05D001021 ORTHO05D000894 9.1e-23 111.3 159 49.1
vmacro05362 Vaccinium macrocarpon HOM05D001115 ORTHO05D011468 1.1e-17 94.4 190 34.7
Glyma.12G111700 Glycine max HOM05D001115 ORTHO05D001023 2.0e-17 93.6 176 34.7
AL3G53850 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 1.7e-16 90.5 194 30.4
Atru.chr6.3006 Acer truncatum HOM05D001115 ORTHO05D001023 3.7e-16 89.4 174 33.3
AT2G20740 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 3.7e-16 89.4 181 31.5
Glyma.06G293700 Glycine max HOM05D001115 ORTHO05D001023 4.8e-16 89.0 176 33.5
Lj3g0023189 Lotus japonicus HOM05D001115 ORTHO05D001023 6.3e-16 88.6 178 33.1
Phvul.011G117300 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 6.3e-16 88.6 176 33.5
VMungo1127G0219 Vigna mungo HOM05D001115 ORTHO05D001023 6.3e-16 88.6 177 33.9
Lalb_Chr19g0135301 Lupinus albus HOM05D001115 ORTHO05D001023 1.1e-15 87.8 170 34.1
CANSAT78G1646 Cannabis sativa HOM05D001115 ORTHO05D001023 1.8e-15 87.0 196 32.7
Carub.0003s3526 Capsella rubella HOM05D001115 ORTHO05D001023 3.1e-15 86.3 181 30.9
TPR.G21758 Trifolium pratense HOM05D001115 ORTHO05D001023 4.1e-15 85.9 176 32.4
Sp3g33990 Schrenkiella parvula HOM05D001115 ORTHO05D001023 5.3e-15 85.5 195 31.3
Thhalv10002095m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 9.1e-15 84.7 194 32.0
Ca_25914_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 1.2e-14 84.3 176 32.4
CAN.G1164.11 Capsicum annuum HOM05D001115 ORTHO05D001023 1.6e-14 84.0 198 32.3
Nitab4.5_0000512g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 2.0e-14 83.6 203 29.1
Manes.13G147500 Manihot esculenta HOM05D001115 ORTHO05D001023 2.6e-14 83.2 192 29.7
ATR0680G167 Amborella trichopoda HOM05D001115 ORTHO05D001023 3.5e-14 82.8 193 31.1
CARHR111410 Cardamine hirsuta HOM05D001115 ORTHO05D001023 3.5e-14 82.8 194 28.9
Nitab4.5_0002526g0050 Nicotiana tabacum HOM05D001115 ORTHO05D001023 3.5e-14 82.8 203 29.6
TWI18G0226 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 4.5e-14 82.4 193 31.1
TWI36G0781 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 4.5e-14 82.4 180 33.9
TAR626G1725 Trochodendron aralioides HOM05D001115 ORTHO05D001023 5.9e-14 82.0 195 31.8
Duzib248G1488 Durio zibethinus HOM05D001115 ORTHO05D001023 7.7e-14 81.6 175 30.9
HanXRQChr17g0553551 Helianthus annuus HOM05D001115 ORTHO05D001023 1.3e-13 80.9 175 30.9
THA.LOC104814499 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 1.7e-13 80.5 182 30.2
Rhsim07G0153200 Rhododendron simsii HOM05D001115 ORTHO05D011468 2.2e-13 80.1 194 30.4
TAR624G0150 Trochodendron aralioides HOM05D001115 ORTHO05D001023 2.2e-13 80.1 177 32.8
Sopen02g023300 Solanum pennellii HOM05D001115 ORTHO05D001023 2.9e-13 79.7 192 29.7
Duzib052G0128 Durio zibethinus HOM05D001115 ORTHO05D001023 3.8e-13 79.3 175 30.9
CAN.G248.20 Capsicum annuum HOM05D001115 ORTHO05D001023 5.0e-13 79.0 203 28.6
Peaxi162Scf00132g00422 Petunia axillaris HOM05D001115 ORTHO05D001023 6.5e-13 78.6 202 28.2
PGSC0003DMG400018311 Solanum tuberosum HOM05D001115 ORTHO05D001023 6.5e-13 78.6 179 30.2
PGSC0003DMG400022440 Solanum tuberosum HOM05D001115 ORTHO05D001023 6.5e-13 78.6 192 28.6
Cpa.g.sc27.59 Carica papaya HOM05D001115 ORTHO05D001023 8.5e-13 78.2 181 33.7
CiPaw.04G125100 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.1e-12 77.8 175 30.9
CSS0027947 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 2.5e-12 76.6 200 28.5
Cpa.g.sc34.143 Carica papaya HOM05D001115 ORTHO05D001023 2.5e-12 76.6 177 29.4
Prupe.3G155500 Prunus persica HOM05D001115 ORTHO05D001023 2.5e-12 76.6 194 30.4
Solyc07g054160.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 2.5e-12 76.6 179 29.6
arahy.Tifrunner.gnm1.ann1.E3DXNV Arachis hypogaea HOM05D001115 ORTHO05D001023 3.2e-12 76.3 176 29.5
BraA07t27795Z Brassica rapa HOM05D001115 ORTHO05D001023 3.2e-12 76.3 187 29.4
Sopen07g028090 Solanum pennellii HOM05D001115 ORTHO05D001023 3.2e-12 76.3 179 29.6
BcaB03g16867 Brassica carinata HOM05D001115 ORTHO05D001023 4.2e-12 75.9 176 30.1
A07p00030 Brassica napus HOM05D001115 ORTHO05D001023 4.2e-12 75.9 181 29.3
Eucgr.A01807 Eucalyptus grandis HOM05D001115 ORTHO05D001023 4.2e-12 75.9 192 28.1
MSTRG.12313 Avicennia marina HOM05D001115 ORTHO05D001023 5.5e-12 75.5 171 31.0
C07p00170 Brassica napus HOM05D001115 ORTHO05D001023 5.5e-12 75.5 181 29.8
BolC7t40468H Brassica oleracea HOM05D001115 ORTHO05D001023 5.5e-12 75.5 181 29.8
GSVIVG01030374001 Vitis vinifera HOM05D001115 ORTHO05D001023 7.2e-12 75.1 193 31.1
BcaC06g36765 Brassica carinata HOM05D001115 ORTHO05D001023 9.4e-12 74.7 181 29.8
COL.COLO4_07553 Corchorus olitorius HOM05D001115 ORTHO05D001023 9.4e-12 74.7 175 30.9
RcHm_v2.0_Chr2g0126211 Rosa chinensis HOM05D001115 ORTHO05D001023 9.4e-12 74.7 189 30.7
ClCG02G017570 Citrullus lanatus HOM05D001115 ORTHO05D001023 1.2e-11 74.3 179 31.3
MELO3C013608.2 Cucumis melo HOM05D001115 ORTHO05D001023 1.2e-11 74.3 179 30.2
Prupe.4G044700 Prunus persica HOM05D001115 ORTHO05D001023 1.2e-11 74.3 200 30.0
Lj2A287T55 Lonicera japonica HOM05D001115 ORTHO05D001023 2.1e-11 73.6 166 34.3
Actinidia11044 Actinidia chinensis HOM05D001115 ORTHO05D001023 2.7e-11 73.2 170 30.6
Solyc02g078450.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 2.7e-11 73.2 192 28.1
CSS0040668 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 3.6e-11 72.8 172 29.7
AUR62037360 Chenopodium quinoa HOM05D001115 ORTHO05D001023 3.6e-11 72.8 174 29.3
CiPaw.03G175400 Carya illinoinensis HOM05D001115 ORTHO05D001023 4.7e-11 72.4 193 27.5
Dinv02169 Davidia involucrata HOM05D001115 ORTHO05D001023 4.7e-11 72.4 173 30.6
Potri.013G134200 Populus trichocarpa HOM05D001115 ORTHO05D001023 6.1e-11 72.0 194 29.9
Thecc.02G177800 Theobroma cacao HOM05D001115 ORTHO05D001023 6.1e-11 72.0 176 30.7
MD17G1242500 Malus domestica HOM05D001115 ORTHO05D001023 8.0e-11 71.6 197 29.4
Oeu058381.1 Olea europaea HOM05D001115 ORTHO05D001023 8.0e-11 71.6 193 31.6
HPP92_021013 Vanilla planifolia HOM05D001115 ORTHO05D001023 8.0e-11 71.6 167 30.5
Aa31LG8G17760 Aethionema arabicum HOM05D001115 ORTHO05D001023 1.0e-10 71.2 206 28.2
Os04g0679900 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 1.0e-10 71.2 178 25.8
Actinidia09860 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.4e-10 70.9 170 30.6
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.4e-10 70.9 179 29.1
SGA_v2.0_scaffold109G31116 Striga asiatica HOM05D001115 ORTHO05D001023 1.4e-10 70.9 170 31.2
GSVIVG01002019001 Vitis vinifera HOM05D001115 ORTHO05D001023 1.4e-10 70.9 202 26.7
Dinv07543 Davidia involucrata HOM05D001115 ORTHO05D001023 1.8e-10 70.5 153 33.3
RcHm_v2.0_Chr5g0008101 Rosa chinensis HOM05D001115 ORTHO05D001023 2.3e-10 70.1 181 30.4
FvH4_3g04940 Fragaria vesca HOM05D001115 ORTHO05D001023 3.0e-10 69.7 181 30.9
vmacro09277 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 3.0e-10 69.7 162 28.4
Migut.H01075 Erythranthe guttata HOM05D001115 ORTHO05D001023 4.0e-10 69.3 177 27.7
Atru.chr10.1912 Acer truncatum HOM05D001115 ORTHO05D001023 5.2e-10 68.9 169 30.8
Actinidia07579 Actinidia chinensis HOM05D001115 ORTHO05D001023 5.2e-10 68.9 195 28.7
Dinv12923 Davidia involucrata HOM05D001115 ORTHO05D001023 5.2e-10 68.9 173 30.1
FvH4_6g26130 Fragaria vesca HOM05D001115 ORTHO05D001023 5.2e-10 68.9 161 29.8
Oeu017970.1 Olea europaea HOM05D001115 ORTHO05D001023 5.2e-10 68.9 165 30.9
Lsat_1_v5_gn_8_132900 Lactuca sativa HOM05D001115 ORTHO05D001023 6.8e-10 68.6 187 31.0
Aqoxy1G02522 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 8.8e-10 68.2 191 29.8
FAN16G2292 Fragaria x ananassa HOM05D001115 ORTHO05D001023 8.8e-10 68.2 181 30.4
FAN21G2614 Fragaria x ananassa HOM05D001115 ORTHO05D001023 8.8e-10 68.2 181 30.4
FAN25G2831 Fragaria x ananassa HOM05D001115 ORTHO05D001023 8.8e-10 68.2 181 30.4
PSO675G8670 Papaver somniferum HOM05D001115 ORTHO05D001023 8.8e-10 68.2 168 30.4
Rhsim04G0067900 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.2e-09 67.8 148 29.7
RhsimUnG0037000 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.2e-09 67.8 148 29.7
Hma1.2p1_1201F.1_g266710 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 1.5e-09 67.4 173 30.1
FAN11G0571 Fragaria x ananassa HOM05D001115 ORTHO05D001023 2.0e-09 67.0 181 30.4
MD10G1295800 Malus domestica HOM05D001115 ORTHO05D001023 3.4e-09 66.2 194 26.8
Potri.004G041500 Populus trichocarpa HOM05D001115 ORTHO05D001023 3.4e-09 66.2 119 35.3
Potri.019G101800 Populus trichocarpa HOM05D001115 ORTHO05D001023 3.4e-09 66.2 167 28.1
Zm00001eb065970 Zea mays HOM05D001115 ORTHO05D001023 4.4e-09 65.9 178 25.3
MD05G1314500 Malus domestica HOM05D001115 ORTHO05D001023 5.7e-09 65.5 187 27.8
Actinidia39455 Actinidia chinensis HOM05D001115 ORTHO05D001023 9.8e-09 64.7 200 28.5
QL08p038410 Quercus lobata HOM05D001115 ORTHO05D001023 9.8e-09 64.7 178 28.7
Gohir.A10G024600 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.3e-08 64.3 183 30.6
Gohir.D10G025300 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.3e-08 64.3 183 31.7
CSS0001393 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 1.7e-08 63.9 198 27.3
Duzib235G0287 Durio zibethinus HOM05D001115 ORTHO05D001023 1.7e-08 63.9 174 31.0
Gorai.011G026600 Gossypium raimondii HOM05D001115 ORTHO05D001023 1.7e-08 63.9 183 30.6
MBI17_g43193_MAGBIO Magnolia biondii HOM05D001115 ORTHO05D001023 2.2e-08 63.5 169 32.0
Sabra06G0188800 Salix brachista HOM05D001115 ORTHO05D011468 2.2e-08 63.5 116 40.5
Cc02_g13180 Coffea canephora HOM05D001115 ORTHO05D001023 3.7e-08 62.8 181 26.0
Potri.011G050900 Populus trichocarpa HOM05D001115 ORTHO05D001023 3.7e-08 62.8 196 29.6
PGR042G0194 Punica granatum HOM05D001115 ORTHO05D001023 3.7e-08 62.8 180 29.4
PGR004G1130 Punica granatum HOM05D001115 ORTHO05D001023 4.8e-08 62.4 158 27.2
TWI38G2403 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 4.8e-08 62.4 196 31.1
Manes.16G026100 Manihot esculenta HOM05D001115 ORTHO05D001023 3.1e-07 59.7 169 29.6
Nn1g06594 Nelumbo nucifera HOM05D001115 ORTHO05D001023 4.1e-07 59.3 194 26.8
CiPaw.10G047300 Carya illinoinensis HOM05D001115 ORTHO05D001023 5.4e-07 58.9 175 26.9
Duzib160G0769 Durio zibethinus HOM05D001115 ORTHO05D001023 5.4e-07 58.9 181 29.3
SEGI_39764 Sequoiadendron giganteum HOM05D001115 ORTHO05D001023 5.4e-07 58.9 147 30.6
ECA246G2980 Erigeron canadensis HOM05D001115 ORTHO05D001023 9.1e-07 58.2 171 29.2
SalBow1G1588 Salvia bowleyana HOM05D001115 ORTHO05D001023 9.1e-07 58.2 101 35.6
Ciclev10016622m.g Citrus clementina HOM05D001115 ORTHO05D001023 1.2e-06 57.8 178 28.1
THA.LOC104814546 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 1.2e-06 57.8 201 26.4
Sabra19G0112900 Salix brachista HOM05D001115 ORTHO05D001023 2.0e-06 57.0 229 24.9
Sed0008977 Sechium edule HOM05D001115 ORTHO05D001023 2.0e-06 57.0 174 23.6
Rhsim02G0127800 Rhododendron simsii HOM05D001115 ORTHO05D001023 3.5e-06 56.2 201 25.4
Eucgr.D00635 Eucalyptus grandis HOM05D001115 ORTHO05D001023 4.5e-06 55.8 160 26.2
Lalb_Chr06g0170931 Lupinus albus HOM05D001115 ORTHO05D001023 4.5e-06 55.8 220 28.2
SMO134G0242 Selaginella moellendorffii HOM05D001115 ORTHO05D001023 5.9e-06 55.5 187 25.1


User provided reference genes

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