Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010468m.g Citrus clementina HOM05D007827 ORTHO05D009749 1.3e-100 369.8 191 100.0
Haze_18158 Corylus avellana HOM05D007827 ORTHO05D009749 1.6e-18 97.1 190 35.3
CiPaw.16G027300 Carya illinoinensis HOM05D007827 ORTHO05D009749 1.5e-16 90.5 190 34.7
CSS0031213 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 9.7e-16 87.8 199 36.2
Cpa.g.sc7.157 Carica papaya HOM05D007827 ORTHO05D009749 1.7e-15 87.0 195 37.4
QL02p000760 Quercus lobata HOM05D007827 ORTHO05D009749 2.8e-15 86.3 198 34.3
Lalb_Chr23g0267841 Lupinus albus HOM05D007827 ORTHO05D009749 6.3e-15 85.1 195 35.4
MELO3C011460.2 Cucumis melo HOM05D007827 ORTHO05D009749 8.2e-15 84.7 196 34.7
CSS0026056 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 1.4e-14 84.0 190 34.2
Sabra06G0174900 Salix brachista HOM05D007827 ORTHO05D009749 3.1e-14 82.8 203 35.5
Manes.16G082000 Manihot esculenta HOM05D007827 ORTHO05D009749 5.3e-14 82.0 197 37.1
Medtr3g104620 Medicago truncatula HOM05D007827 ORTHO05D009749 1.6e-13 80.5 199 34.2
CsaV3_6G032200 Cucumis sativus L. HOM05D007827 ORTHO05D009749 2.0e-13 80.1 193 33.2
MD15G1056900 Malus domestica HOM05D007827 ORTHO05D009749 3.5e-13 79.3 202 33.2
Potri.006G226200 Populus trichocarpa HOM05D007827 ORTHO05D009749 1.0e-12 77.8 202 33.2
Rhsim11G0042400 Rhododendron simsii HOM05D007827 ORTHO05D009749 3.8e-12 75.9 198 32.3
Thecc.09G056900 Theobroma cacao HOM05D007827 ORTHO05D009749 5.0e-12 75.5 94 44.7
TPR.G13014 Trifolium pratense HOM05D007827 ORTHO05D009749 6.5e-12 75.1 210 31.0
ClCG08G010040 Citrullus lanatus HOM05D007827 ORTHO05D009749 1.5e-11 73.9 193 32.6
TPR.G3528 Trifolium pratense HOM05D007827 ORTHO05D009749 1.5e-11 73.9 228 29.4
Cc08_g10870 Coffea canephora HOM05D007827 ORTHO05D009749 1.9e-11 73.6 208 30.3
Medtr1g015840 Medicago truncatula HOM05D007827 ORTHO05D009749 1.9e-11 73.6 196 31.1
Sed0025262 Sechium edule HOM05D007827 ORTHO05D009749 5.5e-11 72.0 110 37.3
Psat6g021400 Pisum sativum HOM05D007827 ORTHO05D009749 7.2e-11 71.6 195 30.8
PGSC0003DMG400008199 Solanum tuberosum HOM05D007827 ORTHO05D009749 9.4e-11 71.2 119 40.3
Peaxi162Scf01001g00001 Petunia axillaris HOM05D007827 ORTHO05D009749 1.2e-10 70.9 195 34.9
Psat5g036160 Pisum sativum HOM05D007827 ORTHO05D009749 1.2e-10 70.9 161 33.5
Solyc08g062840.1 Solanum lycopersicum HOM05D007827 ORTHO05D009749 1.2e-10 70.9 119 40.3
Sopen08g018370 Solanum pennellii HOM05D007827 ORTHO05D009749 1.2e-10 70.9 119 40.3
Actinidia01227 Actinidia chinensis HOM05D007827 ORTHO05D009749 1.6e-10 70.5 204 32.4
CSS0037057 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 2.7e-10 69.7 100 43.0
Sed0014394 Sechium edule HOM05D007827 ORTHO05D009749 8.0e-10 68.2 121 33.9
TAR626G1076 Trochodendron aralioides HOM05D007827 ORTHO05D009749 8.0e-10 68.2 118 35.6
Atru.chr7.1942 Acer truncatum HOM05D007827 ORTHO05D009749 1.0e-09 67.8 70 51.4
Lj1g0018619 Lotus japonicus HOM05D007827 ORTHO05D009749 1.0e-09 67.8 198 31.8
CSS0004361 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 1.4e-09 67.4 104 39.4
Glyma.04G052400 Glycine max HOM05D007827 ORTHO05D009749 1.4e-09 67.4 108 38.0
Peaxi162Scf00297g00062 Petunia axillaris HOM05D007827 ORTHO05D009749 1.8e-09 67.0 186 36.6
Prupe.1G409500 Prunus persica HOM05D007827 ORTHO05D009749 1.8e-09 67.0 131 38.2
Lj5g0025960 Lotus japonicus HOM05D007827 ORTHO05D009749 2.3e-09 66.6 204 27.9
Solyc06g011440.1 Solanum lycopersicum HOM05D007827 ORTHO05D009749 3.0e-09 66.2 127 37.0
Dinv28003 Davidia involucrata HOM05D007827 ORTHO05D009749 6.8e-09 65.1 81 48.1
Nitab4.5_0000972g0020 Nicotiana tabacum HOM05D007827 ORTHO05D009749 6.8e-09 65.1 106 39.6
RcHm_v2.0_Chr6g0311201 Rosa chinensis HOM05D007827 ORTHO05D009749 6.8e-09 65.1 223 29.6
VMungo1309G0458 Vigna mungo HOM05D007827 ORTHO05D009749 6.8e-09 65.1 102 39.2
arahy.Tifrunner.gnm1.ann1.WVJ8VS Arachis hypogaea HOM05D007827 ORTHO05D009749 8.8e-09 64.7 204 27.9
DCAR_003136 Daucus carota HOM05D007827 ORTHO05D009749 1.2e-08 64.3 121 36.4
Sopen06g006480 Solanum pennellii HOM05D007827 ORTHO05D009749 1.2e-08 64.3 127 36.2
Gorai.009G043700 Gossypium raimondii HOM05D007827 ORTHO05D009749 1.5e-08 63.9 140 33.6
Oeu047101.1 Olea europaea HOM05D007827 ORTHO05D009749 1.5e-08 63.9 41 68.3
CAN.G130.10 Capsicum annuum HOM05D007827 ORTHO05D009749 2.6e-08 63.2 200 31.5
Gohir.D05G042650 Gossypium hirsutum HOM05D007827 ORTHO05D009749 2.6e-08 63.2 140 34.3
Nitab4.5_0007177g0010 Nicotiana tabacum HOM05D007827 ORTHO05D009749 2.6e-08 63.2 106 37.7
Nitab4.5_0007037g0010 Nicotiana tabacum HOM05D007827 ORTHO05D009749 5.7e-08 62.0 211 28.4
PGSC0003DMG400029878 Solanum tuberosum HOM05D007827 ORTHO05D009749 7.5e-08 61.6 76 48.7
FAN24G3029 Fragaria x ananassa HOM05D007827 ORTHO05D009749 2.2e-07 60.1 228 27.2
arahy.Tifrunner.gnm1.ann1.EI9IQY Arachis hypogaea HOM05D007827 ORTHO05D009749 2.8e-07 59.7 192 30.2
COL.COLO4_08756 Corchorus olitorius HOM05D030950 ORTHO05D009749 2.8e-07 59.7 101 42.6
FvH4_2g31620 Fragaria vesca HOM05D007827 ORTHO05D009749 4.8e-07 58.9 227 27.3
Nitab4.5_0002039g0090 Nicotiana tabacum HOM05D007827 ORTHO05D009749 4.8e-07 58.9 211 28.0
Oeu018628.1 Olea europaea HOM05D007827 ORTHO05D009749 4.8e-07 58.9 69 46.4
Aqoxy7G01166 Aquilegia oxysepala HOM05D007827 ORTHO05D009749 1.1e-06 57.8 151 31.8
Hma1.2p1_1933F.1_g308040 Hydrangea macrophylla HOM05D007827 ORTHO05D009749 1.1e-06 57.8 48 54.2
arahy.Tifrunner.gnm1.ann1.S72ULK Arachis hypogaea HOM05D007827 ORTHO05D009749 1.8e-06 57.0 209 26.8
Migut.A00115 Erythranthe guttata HOM05D007827 ORTHO05D009749 1.8e-06 57.0 41 63.4
FAN15G3566 Fragaria x ananassa HOM05D007827 ORTHO05D009749 3.1e-06 56.2 227 27.3
THA.LOC104799160 Tarenaya hassleriana HOM05D007827 ORTHO05D009749 3.1e-06 56.2 84 40.5
Phvul.009G078700 Phaseolus vulgaris HOM05D007827 ORTHO05D009749 4.1e-06 55.8 146 30.8


User provided reference genes

Program Settings