Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.3e-134 483.0 242 100.0
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 4.3e-69 265.4 229 62.9
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.1e-35 154.5 245 40.0
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 7.0e-35 151.8 244 38.9
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.5e-32 144.1 137 51.8
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.5e-32 144.1 137 51.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 4.2e-32 142.5 226 39.8
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-31 141.0 135 52.6
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.6e-31 140.6 134 47.8
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.7e-31 139.8 231 40.7
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.6e-31 139.4 235 39.6
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.7e-31 139.0 140 52.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.3e-30 136.7 218 41.7
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.3e-30 136.7 227 39.6
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.0e-30 136.3 142 50.0
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 5.2e-30 135.6 233 38.2
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.7e-30 135.2 131 49.6
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.1e-29 134.4 131 49.6
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 7.5e-29 131.7 136 48.5
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 8.2e-28 128.3 131 45.8
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 8.2e-28 128.3 136 50.0
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.4e-27 127.5 143 46.2
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.8e-27 127.1 228 38.6
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.8e-27 127.1 136 49.3
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.8e-27 127.1 136 49.3
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.1e-27 126.3 137 50.4
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 4.1e-27 125.9 136 48.5
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.1e-27 125.9 136 48.5
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.3e-27 125.6 136 49.3
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 5.3e-27 125.6 136 48.5
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 7.0e-27 125.2 136 49.3
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 9.1e-27 124.8 128 50.0
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.2e-26 124.4 150 44.7
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.2e-26 124.4 234 38.0
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.6e-26 124.0 126 49.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-26 123.2 138 47.8
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.0e-25 121.3 133 48.9
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 1.0e-25 121.3 131 44.3
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.3e-25 120.9 132 47.7
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 8.5e-25 118.2 130 48.5
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 8.5e-25 118.2 131 47.3
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-24 117.9 131 46.6
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-24 117.5 131 46.6
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.9e-24 117.1 173 42.2
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 3.2e-24 116.3 133 44.4
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 3.2e-24 116.3 131 46.6
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 3.2e-24 116.3 131 46.6
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 3.2e-24 116.3 133 46.6
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 4.2e-24 115.9 130 47.7
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 7.2e-24 115.2 231 34.6
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 9.4e-24 114.8 134 44.8
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.6e-23 114.0 135 40.7
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 2.1e-23 113.6 200 38.0
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 2.7e-23 113.2 133 49.6
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 3.6e-23 112.8 133 49.6
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.1e-23 112.1 97 56.7
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.4e-22 110.9 183 41.0
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.8e-22 110.5 125 44.8
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.8e-22 110.5 198 39.4
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 5.2e-22 109.0 144 43.8
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-21 107.5 131 45.8
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.0e-21 107.1 242 35.5
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.0e-21 107.1 132 43.2
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 3.4e-21 106.3 135 48.9
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 3.4e-21 106.3 135 48.9
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 3.4e-21 106.3 142 43.0
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 4.4e-21 105.9 124 43.5
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 4.4e-21 105.9 135 48.1
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 4.4e-21 105.9 135 48.9
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 4.4e-21 105.9 203 34.5
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 7.5e-21 105.1 130 38.5
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 7.5e-21 105.1 135 48.9
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 7.5e-21 105.1 125 49.6
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.3e-20 104.4 128 43.8
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.7e-20 104.0 133 44.4
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.8e-20 103.2 190 33.7
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 4.8e-20 102.4 133 40.6
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.8e-20 102.4 141 39.7
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 6.3e-20 102.1 141 42.6
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 6.3e-20 102.1 207 34.3
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.4e-19 100.9 195 32.3
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 2.4e-19 100.1 138 39.1
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 2.4e-19 100.1 205 33.7
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 5.4e-19 99.0 120 46.7
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 5.4e-19 99.0 130 43.1
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 9.1e-19 98.2 142 40.1
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 2.0e-18 97.1 136 36.0
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.7e-18 96.7 128 39.1
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.7e-18 96.7 128 44.5
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.3e-17 94.4 141 38.3
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.3e-17 94.4 113 42.5
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.3e-17 94.4 135 35.6
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 2.2e-17 93.6 231 31.6
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.5e-16 90.9 118 41.5
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.9e-16 90.5 132 40.2
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.9e-16 90.5 141 34.0
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 2.5e-16 90.1 138 39.1
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.5e-16 90.1 126 40.5
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.2e-16 89.7 132 40.2
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.2e-16 89.7 129 40.3
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.2e-16 89.7 123 41.5
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 4.2e-16 89.4 138 39.9
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 7.2e-16 88.6 125 38.4
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.6e-15 87.4 129 38.8
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.6e-15 87.4 114 39.5
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.7e-15 86.7 114 38.6
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 4.7e-15 85.9 138 37.7
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 8.0e-15 85.1 124 37.1
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 8.0e-15 85.1 139 40.3
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.0e-14 84.7 138 37.7
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 1.4e-14 84.3 112 41.1
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.4e-14 84.3 142 37.3
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 1.8e-14 84.0 112 41.1
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.8e-14 84.0 112 39.3
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 2.3e-14 83.6 131 36.6
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 2.3e-14 83.6 128 35.2
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 3.0e-14 83.2 97 45.4
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-14 82.0 135 35.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 6.8e-14 82.0 162 35.2
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 8.8e-14 81.6 113 41.6
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 8.8e-14 81.6 113 41.6
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-13 81.3 129 39.5
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 1.2e-13 81.3 127 38.6
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 1.2e-13 81.3 127 38.6
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-13 80.9 111 39.6
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.5e-13 80.9 106 40.6
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 2.0e-13 80.5 162 36.4
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 2.6e-13 80.1 130 36.2
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-13 79.7 135 36.3
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 3.4e-13 79.7 114 41.2
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 5.7e-13 79.0 162 34.6
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 7.5e-13 78.6 100 44.0
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 9.8e-13 78.2 129 34.1
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 9.8e-13 78.2 129 34.1
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 9.8e-13 78.2 129 34.1
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.3e-12 77.8 110 40.0
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-12 77.4 128 37.5
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-12 76.6 139 36.0
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-12 76.6 139 32.4
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.9e-12 75.9 135 36.3
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 6.3e-12 75.5 205 33.2
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-11 74.3 148 33.8
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.4e-11 74.3 148 33.8
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 1.8e-11 73.9 111 41.4
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 2.4e-11 73.6 109 39.4
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-11 73.2 111 36.9
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 3.1e-11 73.2 117 39.3
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 4.1e-11 72.8 148 35.1
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 4.1e-11 72.8 111 41.4
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.2e-11 71.6 137 33.6
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 9.2e-11 71.6 93 46.2
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 3.5e-10 69.7 148 31.8
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 3.5e-10 69.7 148 31.8
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.5e-10 69.3 127 31.5
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.0e-09 68.2 87 40.2
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 1.0e-09 68.2 150 32.7
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 2.3e-09 67.0 136 33.8
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 2.3e-09 67.0 136 33.8
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 2.3e-09 67.0 157 31.8
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 2.9e-09 66.6 148 30.4
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 3.8e-09 66.2 151 30.5
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 3.8e-09 66.2 138 32.6
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 3.8e-09 66.2 151 30.5
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 3.8e-09 66.2 93 43.0
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.8e-09 66.2 118 30.5
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.0e-09 65.9 79 43.0
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 1.1e-08 64.7 147 30.6
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 1.1e-08 64.7 109 40.4
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.5e-08 64.3 149 31.5
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.9e-08 63.9 108 34.3
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 4.3e-08 62.8 152 29.6
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 5.6e-08 62.4 147 29.3
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 7.3e-08 62.0 128 30.5
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-07 61.2 139 31.7
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.2e-07 61.2 74 43.2
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 2.1e-07 60.5 116 34.5
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.8e-07 60.1 107 37.4
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 6.1e-07 58.9 212 27.4
Haze_00227 Corylus avellana HOM05D000896 ORTHO05D000594 1.8e-06 57.4 137 32.8
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 2.3e-06 57.0 121 33.1
PGR004G0789 Punica granatum HOM05D000896 ORTHO05D000594 5.2e-06 55.8 113 36.3
arahy.Tifrunner.gnm1.ann1.U52TS6 Arachis hypogaea HOM05D064209 ORTHO05D038858 6.8e-06 55.5 88 35.2
MBI18_g09775_MAGBIO Magnolia biondii HOM05D060425 ORTHO05D048574 6.8e-06 55.5 111 28.8
Manes.14G006500 Manihot esculenta HOM05D000896 ORTHO05D000594 8.9e-06 55.1 105 32.4


User provided reference genes

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