Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.3e-35 152.5 75 100.0
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 3.1e-26 121.3 75 81.3
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-24 116.3 75 76.0
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.3e-24 115.9 73 78.1
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 6.5e-24 113.6 75 74.7
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 8.5e-24 113.2 75 73.3
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.1e-23 112.8 73 72.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-23 112.8 75 72.0
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.2e-23 110.2 73 74.0
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.1e-22 108.6 75 69.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 4.7e-22 107.5 68 77.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.8e-21 105.5 71 69.0
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 5.2e-21 104.0 76 71.1
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 5.2e-21 104.0 76 71.1
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 5.2e-21 104.0 76 71.1
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 5.2e-21 104.0 76 71.1
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 5.2e-21 104.0 76 71.1
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.0e-20 102.1 88 59.1
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.0e-20 102.1 66 69.7
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.6e-20 101.7 73 67.1
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 4.4e-20 100.9 75 62.7
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 5.7e-20 100.5 66 68.2
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 9.7e-20 99.8 67 67.2
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.3e-19 99.4 76 68.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.3e-19 99.4 66 66.7
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.3e-19 99.4 66 66.7
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.3e-19 99.4 67 67.2
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.3e-19 99.4 75 66.7
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.1e-18 96.3 76 68.4
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-18 96.3 69 66.7
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-18 96.3 69 66.7
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.1e-18 96.3 69 65.2
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-18 95.9 76 65.8
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-18 95.9 76 65.8
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.4e-18 95.9 76 65.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.4e-18 95.9 61 73.8
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.8e-18 95.5 75 62.7
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 2.4e-18 95.1 76 65.8
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 4.1e-18 94.4 76 64.5
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 4.1e-18 94.4 76 64.5
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.1e-18 94.4 76 67.1
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 5.3e-18 94.0 76 63.2
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 5.3e-18 94.0 76 63.2
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 5.3e-18 94.0 76 63.2
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 5.3e-18 94.0 73 63.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 7.0e-18 93.6 68 64.7
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 7.0e-18 93.6 76 64.5
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 9.1e-18 93.2 76 63.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-17 92.0 68 64.7
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.6e-17 91.7 76 61.8
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.6e-17 91.7 76 61.8
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.6e-17 91.7 68 64.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.5e-17 91.3 67 67.2
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 5.9e-17 90.5 76 60.5
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 5.9e-17 90.5 76 63.2
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.3e-16 89.4 68 67.6
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-16 89.0 67 61.2
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.2e-16 88.6 68 66.2
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 3.8e-16 87.8 69 60.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.1e-15 86.3 62 64.5
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.9e-15 85.5 71 63.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.9e-15 85.5 73 61.6
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 1.9e-15 85.5 61 63.9
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.9e-15 85.5 69 62.3
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.5e-15 85.1 86 53.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 3.2e-15 84.7 69 56.5
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.2e-15 84.7 86 50.0
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.2e-15 84.7 86 50.0
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 7.2e-15 83.6 65 64.6
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 7.2e-15 83.6 62 62.9
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.2e-14 82.8 63 63.5
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.2e-14 82.8 65 63.1
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.6e-14 82.4 66 59.1
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.7e-14 81.6 64 60.9
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 8.0e-14 80.1 62 62.9
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.4e-13 79.3 63 60.3
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.4e-13 79.3 65 58.5
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.4e-13 79.3 67 55.2
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.4e-13 79.3 67 55.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.8e-13 79.0 69 59.4
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.3e-13 78.6 62 62.9
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.0e-13 78.2 60 66.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.0e-13 78.2 62 61.3
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.0e-13 78.2 61 59.0
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 4.0e-13 77.8 64 57.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 4.0e-13 77.8 65 61.5
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.0e-13 77.8 69 53.6
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 5.2e-13 77.4 61 60.7
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 5.2e-13 77.4 61 60.7
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 6.8e-13 77.0 62 62.9
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.8e-13 76.6 62 59.7
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 8.8e-13 76.6 65 58.5
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 8.8e-13 76.6 64 56.2
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.2e-12 76.3 62 59.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.0e-12 75.5 74 51.4
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.0e-12 75.5 74 51.4
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-12 75.5 62 58.1
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-12 75.5 62 58.1
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 2.0e-12 75.5 62 58.1
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 2.0e-12 75.5 62 58.1
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 2.0e-12 75.5 66 59.1
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 2.6e-12 75.1 62 59.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.4e-12 74.7 62 58.1
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.4e-12 74.7 70 55.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.4e-12 74.7 60 65.0
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.4e-12 74.3 68 52.9
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 58.1
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 58.1
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 59.7
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 59.7
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 56.5
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 56.5
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 59.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 59.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 5.7e-12 73.9 62 59.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 5.7e-12 73.9 60 63.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.7e-12 73.9 61 62.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 5.7e-12 73.9 61 62.3
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 7.5e-12 73.6 65 53.8
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 9.7e-12 73.2 62 59.7
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 9.7e-12 73.2 62 59.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 9.7e-12 73.2 62 59.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 9.7e-12 73.2 66 56.1
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 9.7e-12 73.2 61 62.3
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 9.7e-12 73.2 72 52.8
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.3e-11 72.8 67 58.2
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.3e-11 72.8 62 56.5
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.3e-11 72.8 62 59.7
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.7e-11 72.4 62 56.5
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.7e-11 72.4 67 55.2
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 2.2e-11 72.0 59 57.6
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.2e-11 72.0 63 58.7
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 2.2e-11 72.0 62 59.7
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.8e-11 71.6 62 54.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 2.8e-11 71.6 62 58.1
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.7e-11 71.2 62 59.7
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.7e-11 71.2 62 58.1
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.7e-11 71.2 67 52.2
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.8e-11 70.9 60 60.0
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 6.3e-11 70.5 62 54.8
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 6.3e-11 70.5 62 54.8
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.3e-11 70.1 63 57.1
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.4e-10 69.3 60 55.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.4e-10 69.3 66 54.5
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.8e-10 68.9 63 55.6
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.8e-10 68.9 62 51.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.8e-10 68.9 63 52.4
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.8e-10 68.9 62 58.1
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.4e-10 68.6 61 57.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-10 68.6 67 55.2
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.1e-10 68.2 48 66.7
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.1e-10 68.2 62 54.8
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.1e-10 68.2 66 50.0
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.1e-10 67.8 48 68.8
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 4.1e-10 67.8 62 50.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.3e-10 67.4 66 50.0
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.0e-10 67.0 66 53.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 7.0e-10 67.0 66 53.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 7.0e-10 67.0 61 54.1
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 9.1e-10 66.6 62 54.8
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 9.1e-10 66.6 64 53.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.2e-09 66.2 67 50.7
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.6e-09 65.9 66 53.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-09 65.5 62 51.6
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.0e-09 65.5 62 50.0
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.7e-09 65.1 66 51.5
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 2.7e-09 65.1 62 51.6
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.7e-09 65.1 62 51.6
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 4.5e-09 64.3 61 55.7
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.3e-08 62.8 69 49.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.7e-08 62.4 60 53.3
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.7e-08 62.4 48 64.6
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.9e-08 61.6 54 57.4
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-08 61.6 66 50.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.9e-08 61.6 66 51.5
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 6.5e-08 60.5 57 54.4
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 6.5e-08 60.5 67 46.3
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-07 59.7 46 60.9
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 1.6e-06 55.8 51 47.1


User provided reference genes

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