Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.5e-124 448.7 219 100.0
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.2e-102 376.7 222 83.8
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.7e-102 375.6 205 90.2
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.0e-90 335.1 218 78.0
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.2e-71 271.9 218 61.5
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.7e-70 269.2 213 62.0
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 1.0e-69 267.3 212 60.8
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.0e-69 265.8 213 61.0
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 8.7e-69 264.2 218 59.2
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 3.3e-68 262.3 219 57.1
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.3e-68 262.3 207 63.3
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 5.6e-68 261.5 218 57.8
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 2.1e-67 259.6 219 56.2
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 2.1e-67 259.6 212 59.0
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 3.7e-67 258.8 228 56.1
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 6.2e-67 258.1 213 56.8
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 6.2e-67 258.1 215 57.2
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 8.1e-67 257.7 218 58.7
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 8.1e-67 257.7 229 54.6
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 8.1e-67 257.7 212 58.0
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 1.1e-66 257.3 232 53.4
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 1.1e-66 257.3 212 57.5
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 1.8e-66 256.5 228 56.6
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 1.8e-66 256.5 212 58.5
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 2.4e-66 256.1 227 55.9
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.4e-66 256.1 225 57.8
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 2.4e-66 256.1 214 59.3
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 3.1e-66 255.8 213 58.2
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 4.0e-66 255.4 212 59.4
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 6.9e-66 254.6 217 57.6
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 1.2e-65 253.8 223 55.6
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.2e-65 253.8 213 58.2
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 1.2e-65 253.8 219 56.6
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 1.5e-65 253.4 214 58.4
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 1.5e-65 253.4 216 58.3
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 2.6e-65 252.7 213 57.7
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 2.6e-65 252.7 217 57.6
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 5.8e-65 251.5 227 55.5
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 7.6e-65 251.1 213 56.3
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 7.6e-65 251.1 214 57.9
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.0e-64 250.8 213 56.8
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 1.0e-64 250.8 213 55.9
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.3e-64 250.4 231 56.3
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 1.3e-64 250.4 213 57.3
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 1.3e-64 250.4 213 56.8
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.3e-64 250.4 213 56.8
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 1.7e-64 250.0 215 56.7
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 1.7e-64 250.0 216 56.9
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.2e-64 249.6 213 55.9
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 3.8e-64 248.8 213 57.3
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 3.8e-64 248.8 213 55.4
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 4.9e-64 248.4 215 55.3
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 8.4e-64 247.7 218 56.4
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 1.1e-63 247.3 215 55.8
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.4e-63 246.9 218 56.0
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 2.5e-63 246.1 214 56.5
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 3.2e-63 245.7 216 56.5
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 5.5e-63 245.0 212 55.7
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 5.5e-63 245.0 213 56.3
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 9.3e-63 244.2 232 56.5
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.6e-62 243.4 213 54.5
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.6e-62 243.4 218 54.6
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.1e-62 243.0 212 55.7
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 2.7e-62 242.7 213 54.5
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 2.7e-62 242.7 212 58.0
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 3.5e-62 242.3 214 53.7
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 4.6e-62 241.9 231 52.4
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 1.0e-61 240.7 213 54.5
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 1.0e-61 240.7 215 53.5
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 1.0e-61 240.7 217 53.9
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 1.0e-61 240.7 217 55.8
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 1.3e-61 240.4 217 53.5
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 1.8e-61 240.0 213 54.9
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 2.3e-61 239.6 218 52.3
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 2.3e-61 239.6 212 55.7
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 2.3e-61 239.6 214 57.9
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.3e-61 239.6 220 53.2
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 2.3e-61 239.6 228 53.1
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 2.3e-61 239.6 228 53.1
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 3.0e-61 239.2 218 52.3
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 3.0e-61 239.2 213 53.1
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.0e-61 239.2 212 56.1
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.0e-61 239.2 212 56.1
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 3.9e-61 238.8 213 53.5
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 3.9e-61 238.8 213 53.5
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 5.1e-61 238.4 219 54.8
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 5.1e-61 238.4 230 50.4
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 6.7e-61 238.0 210 54.8
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 6.7e-61 238.0 218 54.1
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 1.1e-60 237.3 240 55.0
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 1.1e-60 237.3 213 54.0
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 1.1e-60 237.3 229 51.5
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.5e-60 236.9 212 56.1
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.9e-60 236.5 217 54.4
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.5e-60 236.1 220 53.2
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 2.5e-60 236.1 229 54.1
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.3e-60 235.3 212 54.7
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.3e-60 235.3 212 55.2
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 4.3e-60 235.3 228 52.2
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 5.7e-60 235.0 228 52.6
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.4e-60 234.6 222 60.8
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 7.4e-60 234.6 219 52.1
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.6e-59 233.4 219 51.6
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 2.1e-59 233.0 214 55.6
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 2.1e-59 233.0 232 50.9
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 2.8e-59 232.6 214 53.3
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 6.3e-59 231.5 214 51.4
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 1.8e-58 229.9 215 52.6
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 5.3e-58 228.4 216 50.9
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.3e-58 228.4 216 51.4
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.3e-58 228.4 216 51.4
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 6.9e-58 228.0 215 50.2
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 9.0e-58 227.6 213 53.1
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 4.5e-57 225.3 210 53.8
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.3e-56 223.8 190 56.8
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 6.5e-56 221.5 228 49.1
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 5.5e-55 218.4 219 53.0
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 7.2e-55 218.0 228 52.6
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 9.3e-55 217.6 215 52.6
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.6e-54 215.3 207 58.9
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.3e-53 213.8 212 51.9
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 3.0e-53 212.6 213 51.2
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.3e-51 204.9 212 48.6
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 1.2e-49 200.7 214 50.0
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 3.4e-49 199.1 217 47.9
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.7e-49 198.0 212 48.6
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 3.0e-45 186.0 174 52.3
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 2.0e-44 183.3 189 49.7
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 5.7e-44 181.8 216 43.5
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 3.7e-43 179.1 174 53.4
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 4.8e-43 178.7 215 45.1
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 6.3e-43 178.3 212 46.2
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 1.4e-42 177.2 217 42.9
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.8e-34 150.2 202 41.1
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.8e-34 150.2 202 41.1
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.6e-33 146.4 142 51.4
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 1.3e-32 144.1 121 57.0
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 5.0e-32 142.1 123 56.1
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 1.6e-30 137.1 123 51.2
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 3.6e-30 136.0 229 36.2
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 6.1e-30 135.2 149 48.3
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 3.0e-29 132.9 221 32.6
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 1.5e-28 130.6 141 48.2
Cc11_g01610 Coffea canephora HOM05D004606 ORTHO05D005086 2.7e-25 119.8 81 67.9
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 1.2e-20 104.4 78 64.1
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 2.6e-20 103.2 164 36.0
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 2.7e-17 93.2 195 34.4
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 1.9e-15 87.0 196 31.1
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 5.6e-07 58.9 34 70.6


User provided reference genes

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