Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 2.9e-246 854.7 424 100.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.3e-164 583.6 425 67.8
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-163 580.5 422 67.3
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.2e-162 577.0 422 66.8
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 3.4e-162 575.5 426 65.3
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 4.9e-161 571.6 425 66.4
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.1e-160 570.5 422 65.6
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 6.0e-159 564.7 422 65.9
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.0e-158 562.4 422 65.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 5.1e-158 561.6 422 65.9
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 8.2e-156 554.3 419 64.0
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.8e-155 553.1 425 66.6
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 2.6e-154 549.3 403 67.5
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 7.6e-154 547.7 426 64.6
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 4.2e-152 542.0 425 64.0
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 3.5e-151 538.9 424 63.0
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.6e-151 538.5 424 63.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 6.0e-151 538.1 424 63.4
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.3e-150 536.2 424 63.2
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 8.7e-150 534.3 426 62.4
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.8e-147 526.6 424 60.1
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 4.1e-147 525.4 424 60.6
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 5.9e-146 521.5 414 63.0
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 5.9e-146 521.5 426 61.7
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.4e-144 516.9 382 67.5
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 5.1e-142 508.4 424 60.1
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.3e-141 505.8 426 59.4
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.0e-138 496.5 423 58.6
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.0e-137 494.2 396 60.9
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 7.2e-136 488.0 423 57.2
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.7e-135 486.1 415 57.3
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 4.7e-135 485.3 404 58.7
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.0e-134 484.2 423 57.2
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.4e-134 483.8 409 57.9
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 3.9e-134 482.3 415 57.6
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.1e-134 481.9 415 58.1
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 6.7e-134 481.5 423 56.3
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-133 478.4 422 57.6
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.7e-132 476.9 415 57.6
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.8e-132 476.1 427 56.0
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 3.7e-132 475.7 417 57.8
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 6.3e-132 474.9 423 57.0
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.8e-131 473.4 427 56.7
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.1e-131 472.6 398 56.8
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 5.3e-131 471.9 415 55.9
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 7.0e-131 471.5 408 57.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.5e-130 470.3 424 55.4
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.5e-130 470.3 434 57.8
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.2e-129 466.5 424 55.0
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 2.2e-129 466.5 427 56.7
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 8.5e-129 464.5 411 59.1
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 4.2e-128 462.2 426 57.5
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-127 459.9 409 57.5
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 6.7e-126 454.9 419 54.4
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.6e-125 453.0 392 57.7
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 9.7e-125 451.1 422 56.6
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 8.2e-124 448.0 422 55.0
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 8.2e-124 448.0 409 55.3
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 3.1e-123 446.0 419 53.7
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.2e-122 444.1 396 56.8
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 3.5e-122 442.6 408 56.1
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 1.0e-121 441.0 371 60.1
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.7e-121 440.3 385 56.4
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 1.5e-120 437.2 421 54.6
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 7.2e-120 434.9 424 52.6
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.0e-118 431.0 391 55.0
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.5e-117 427.2 420 52.6
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 9.7e-117 424.5 423 52.5
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 4.1e-115 419.1 402 55.5
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 9.1e-115 417.9 410 51.7
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 1.3e-113 414.1 428 50.0
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-111 407.5 393 53.9
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.4e-110 404.1 436 49.5
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 8.8e-110 401.4 384 54.2
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.5e-109 400.6 383 54.0
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.4e-109 399.4 400 52.0
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 4.4e-109 399.1 379 52.5
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 9.8e-109 397.9 394 53.3
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.3e-108 397.5 419 49.9
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.1e-107 394.4 400 51.0
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 3.1e-107 392.9 420 49.5
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 5.4e-107 392.1 386 52.6
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 5.4e-107 392.1 390 51.3
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 7.0e-107 391.7 420 49.5
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 9.1e-107 391.3 390 50.8
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.2e-106 391.0 426 51.2
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.6e-106 390.6 403 50.4
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 2.7e-106 389.8 426 48.6
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.7e-106 389.8 390 51.3
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.5e-106 389.4 384 52.1
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.5e-106 389.0 374 53.7
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 4.5e-106 389.0 390 51.0
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 6.6e-105 385.2 394 53.6
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 4.2e-104 382.5 400 49.5
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.2e-103 380.9 406 51.5
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 4.7e-103 379.0 420 47.9
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 1.3e-100 370.9 256 71.9
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.7e-100 370.5 387 50.6
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 3.1e-99 366.3 401 50.4
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-92 343.2 326 56.7
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.2e-90 337.8 302 56.6
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 5.6e-88 328.9 397 45.3
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 7.0e-83 312.0 252 62.3
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.5e-80 304.3 406 45.1
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-80 303.9 295 56.3
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 7.3e-80 302.0 273 58.6
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.2e-79 301.2 284 53.2
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 2.3e-78 297.0 217 69.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 5.8e-77 292.4 174 79.9
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 9.9e-77 291.6 206 68.4
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.9e-73 279.6 228 59.6
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 5.6e-72 275.8 295 48.8
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.6e-71 273.1 196 66.8
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 3.8e-68 263.1 196 66.8
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 4.9e-68 262.7 316 45.9
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 5.3e-62 242.7 420 35.2
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.6e-58 231.1 383 34.5
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.8e-58 228.8 169 66.9
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 2.0e-53 214.2 178 60.1
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 8.4e-52 208.8 212 57.1
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.8e-47 193.0 252 44.8
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 3.1e-46 190.3 219 51.1
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-45 188.0 323 36.8
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-43 181.0 137 68.6
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 6.7e-41 172.6 162 54.3
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-40 171.4 279 38.4
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.1e-39 167.5 165 53.3
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 5.8e-37 159.5 163 51.5
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 7.9e-34 149.1 178 49.4
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 6.7e-33 146.0 103 65.0
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.7e-32 142.1 111 68.5
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.2e-31 139.0 115 65.2
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 5.5e-27 126.3 99 63.6
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.4e-27 125.6 213 39.0
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-24 117.5 116 50.9
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.3e-23 112.8 116 49.1
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-14 84.7 87 49.4
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.5e-11 73.2 91 39.6
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-09 68.2 71 47.9
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 3.0e-09 67.4 52 53.8
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 2.6e-08 64.3 91 36.3


User provided reference genes

Program Settings