Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 3.5e-83 311.6 160 100.0
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 7.8e-51 204.1 167 65.3
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 1.0e-50 203.8 167 65.9
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 2.5e-49 199.1 160 68.8
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 3.3e-49 198.7 168 64.3
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 9.5e-49 197.2 167 64.7
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.2e-48 196.8 165 63.6
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 4.7e-48 194.9 168 64.9
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 6.2e-48 194.5 167 64.1
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 1.4e-47 193.4 168 62.5
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 2.4e-47 192.6 169 65.1
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 2.4e-47 192.6 169 63.3
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 4.0e-47 191.8 167 63.5
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 3.4e-46 188.7 165 64.2
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 2.9e-45 185.7 167 62.9
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.1e-44 183.7 167 61.7
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 3.2e-44 182.2 167 61.1
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 3.2e-44 182.2 163 60.7
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.2e-43 180.3 169 61.5
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 4.6e-43 178.3 167 59.9
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 7.8e-43 177.6 167 60.5
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.7e-42 176.4 167 58.1
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.7e-42 176.4 168 61.3
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 1.1e-41 173.7 167 61.1
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.9e-41 172.9 168 58.3
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.9e-41 172.9 167 56.3
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 3.3e-41 172.2 167 59.3
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 4.3e-41 171.8 171 58.5
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 2.8e-40 169.1 169 56.2
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.1e-39 167.2 168 56.5
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 1.4e-39 166.8 170 58.2
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 1.8e-39 166.4 168 56.5
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.8e-39 166.4 168 56.5
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.8e-39 166.4 161 58.4
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.8e-39 166.4 161 58.4
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 2.4e-39 166.0 167 60.5
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 3.1e-39 165.6 176 56.8
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 4.0e-39 165.2 170 57.6
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.0e-39 165.2 168 56.5
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 9.0e-39 164.1 168 56.0
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 7.6e-38 161.0 166 56.6
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 9.9e-38 160.6 176 55.7
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.3e-37 160.2 168 55.4
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.7e-37 159.8 166 56.6
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.7e-37 159.8 166 56.0
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.7e-37 159.8 168 54.8
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 4.9e-37 158.3 168 56.5
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 6.4e-37 157.9 167 54.5
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 6.4e-37 157.9 170 52.9
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.4e-36 156.8 170 55.3
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 4.2e-36 155.2 170 52.4
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.1e-35 152.9 167 53.3
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 2.1e-35 152.9 175 53.1
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 1.7e-34 149.8 179 54.7
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 2.3e-34 149.4 166 52.4
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 2.5e-33 146.0 158 50.0
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 5.6e-33 144.8 166 52.4
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 5.6e-33 144.8 177 52.0
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 2.1e-32 142.9 172 51.2
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 6.2e-32 141.4 167 47.9
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 1.1e-31 140.6 167 51.5
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.8e-31 139.8 164 51.2
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 3.1e-31 139.0 164 52.4
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 5.3e-31 138.3 164 50.6
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 5.3e-31 138.3 160 49.4
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 9.0e-31 137.5 167 48.5
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 9.0e-31 137.5 167 47.3
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.0e-30 136.3 174 47.7
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 2.6e-30 136.0 162 52.5
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.4e-30 135.6 156 50.6
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 3.4e-30 135.6 165 50.9
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.4e-30 135.6 167 46.7
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 4.5e-30 135.2 160 50.0
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 5.8e-30 134.8 209 43.1
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 3.8e-29 132.1 209 42.6
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 8.4e-29 131.0 159 51.6
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 3.2e-28 129.0 160 48.8
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 5.4e-28 128.3 171 48.5
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 1.6e-27 126.7 165 46.7
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 2.7e-27 125.9 185 44.3
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 2.7e-27 125.9 165 44.8
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 2.7e-27 125.9 163 49.1
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 7.9e-27 124.4 185 44.3
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 7.9e-27 124.4 185 44.3
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 7.9e-27 124.4 185 44.3
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 7.9e-27 124.4 185 44.3
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.8e-26 123.2 169 49.7
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 3.0e-26 122.5 165 47.9
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 3.9e-26 122.1 158 48.7
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 6.7e-26 121.3 162 47.5
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.1e-25 120.6 215 40.5
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.1e-25 120.6 169 49.1
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.5e-25 120.2 169 49.1
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 4.3e-25 118.6 159 46.5
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 4.3e-25 118.6 169 47.9
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 5.6e-25 118.2 169 41.4
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 7.4e-25 117.9 190 40.5
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 7.4e-25 117.9 186 41.4
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 2.8e-24 115.9 185 41.1
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 3.7e-24 115.5 186 41.4
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 6.2e-24 114.8 167 45.5
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 2.4e-23 112.8 160 48.8
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 3.1e-23 112.5 170 42.9
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.1e-23 112.5 179 45.3
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 5.3e-23 111.7 171 42.7
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 9.0e-23 110.9 161 47.2
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 3.4e-22 109.0 167 42.5
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 3.4e-22 109.0 180 43.3
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 5.8e-22 108.2 173 41.6
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 5.8e-22 108.2 159 48.4
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 9.9e-22 107.5 169 40.2
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 1.3e-21 107.1 204 37.7
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 8.4e-21 104.4 171 42.1
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 4.2e-20 102.1 161 42.2
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 5.5e-20 101.7 139 51.8
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 7.1e-20 101.3 165 39.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.6e-19 100.1 147 45.6
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 4.6e-19 98.6 157 43.3
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 6.0e-19 98.2 194 39.7
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 6.0e-19 98.2 162 42.6
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 1.5e-17 93.6 119 49.6
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.5e-17 93.6 167 40.7
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 2.5e-17 92.8 171 37.4
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.3e-16 90.5 163 36.2
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.6e-16 90.1 162 35.8
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 2.8e-16 89.4 152 43.4
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.1e-15 87.4 153 39.2
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 4.0e-15 85.5 151 38.4
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 8.4e-13 77.8 166 35.5
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 9.3e-12 74.3 150 33.3
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 3.0e-10 69.3 157 36.3
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 8.7e-10 67.8 157 35.0
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 2.2e-08 63.2 165 30.9
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 2.8e-08 62.8 157 30.6


User provided reference genes

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