Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010245m.g Citrus clementina HOM05D008538 ORTHO05D010142 1.2e-74 283.1 145 100.0
Ciclev10010289m.g Citrus clementina HOM05D019219 ORTHO05D010142 7.4e-32 141.0 87 81.6
Atru.chr2.2829 Acer truncatum HOM05D008538 ORTHO05D010142 7.4e-24 114.4 143 54.5
Haze_09520 Corylus avellana HOM05D008538 ORTHO05D010142 4.9e-20 101.7 152 48.7
FvH4_3g20870 Fragaria vesca HOM05D008538 ORTHO05D010142 2.5e-19 99.4 131 46.6
FAN11G3526 Fragaria x ananassa HOM05D008538 ORTHO05D010142 2.5e-19 99.4 131 46.6
Cfa020514 Carpinus fangiana HOM05D008538 ORTHO05D010142 5.5e-19 98.2 154 48.7
MD03G1219700 Malus domestica HOM05D008538 ORTHO05D010142 9.3e-19 97.4 134 48.5
FAN21G1320 Fragaria x ananassa HOM05D008538 ORTHO05D010142 1.6e-18 96.7 131 45.8
FAN25G2351 Fragaria x ananassa HOM05D001272 ORTHO05D001843 6.0e-18 94.7 131 45.0
Prupe.4G189200 Prunus persica HOM05D008538 ORTHO05D010142 7.9e-18 94.4 133 47.4
Dinv08337 Davidia involucrata HOM05D008538 ORTHO05D010142 1.0e-17 94.0 126 49.2
Thecc.07G072500 Theobroma cacao HOM05D019219 ORTHO05D010142 6.7e-17 91.3 148 45.3
Hma1.2p1_1003F.1_g246760 Hydrangea macrophylla HOM05D008538 ORTHO05D010142 8.7e-17 90.9 129 47.3
CSS0013852 Camellia sinensis var. sinensis HOM05D008538 ORTHO05D010142 1.9e-16 89.7 132 44.7
CSS0046110 Camellia sinensis var. sinensis HOM05D008538 ORTHO05D010142 1.9e-16 89.7 132 44.7
TWI39G0570 Tripterygium wilfordii HOM05D008538 ORTHO05D010142 9.7e-16 87.4 129 44.2
Actinidia18751 Actinidia chinensis HOM05D008538 ORTHO05D010142 3.7e-15 85.5 128 43.8
QL08p018693 Quercus lobata HOM05D008538 ORTHO05D010142 6.3e-15 84.7 151 40.4
QL93p2023_0080 Quercus lobata HOM05D008538 ORTHO05D010142 1.8e-14 83.2 150 39.3
Cpa.g.sc80.108 Carica papaya HOM05D008538 ORTHO05D010142 1.5e-13 80.1 107 49.5
Manes.03G116200 Manihot esculenta HOM05D008538 ORTHO05D010142 3.4e-13 79.0 145 37.2
Duzib268G1845 Durio zibethinus HOM05D019219 ORTHO05D010142 4.5e-13 78.6 148 43.2
Manes.15G083500 Manihot esculenta HOM05D008538 ORTHO05D010142 1.0e-12 77.4 145 37.9
Cc05_g12630 Coffea canephora HOM05D008538 ORTHO05D010142 9.4e-11 70.9 128 38.3
TPR.G33280 Trifolium pratense HOM05D011644 ORTHO05D010142 2.7e-10 69.3 135 38.5
vmacro09554 Vaccinium macrocarpon HOM05D008538 ORTHO05D010142 8.8e-09 64.3 102 48.0
Gohir.A11G283900 Gossypium hirsutum HOM05D019219 ORTHO05D010142 2.0e-08 63.2 135 39.3
MSTRG.6852 Avicennia marina HOM05D008538 ORTHO05D010142 5.7e-08 61.6 114 40.4
PGSC0003DMG400025004 Solanum tuberosum HOM05D008538 ORTHO05D010142 5.7e-08 61.6 127 40.2
COL.COLO4_09473 Corchorus olitorius HOM05D019219 ORTHO05D010142 2.8e-07 59.3 147 35.4
Lsat_1_v5_gn_5_6940 Lactuca sativa HOM05D008538 ORTHO05D010142 2.8e-07 59.3 128 38.3
Lalb_Chr19g0134471 Lupinus albus HOM05D011644 ORTHO05D010142 8.2e-07 57.8 148 35.8
Phvul.011G154700 Phaseolus vulgaris HOM05D011644 ORTHO05D010142 1.1e-06 57.4 137 35.8
Glyma.06G253800 Glycine max HOM05D011644 ORTHO05D010142 2.4e-06 56.2 134 35.1
Gohir.D11G294900 Gossypium hirsutum HOM05D019219 ORTHO05D010142 2.4e-06 56.2 133 36.8
Gorai.007G318300 Gossypium raimondii HOM05D019219 ORTHO05D010142 2.4e-06 56.2 133 36.8
Eucgr.D01016 Eucalyptus grandis HOM05D008538 ORTHO05D010142 4.1e-06 55.5 128 35.9
Nitab4.5_0000207g0250 Nicotiana tabacum HOM05D008538 ORTHO05D010142 5.3e-06 55.1 127 37.8
ECA246G3043 Erigeron canadensis HOM05D008538 ORTHO05D010142 9.1e-06 54.3 135 34.1


User provided reference genes

Program Settings