Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 4.2e-284 980.7 501 100.0
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 6.2e-171 604.7 507 63.9
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 5.3e-170 601.7 500 63.4
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 2.2e-168 596.3 510 63.5
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 4.6e-166 588.6 510 61.2
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 7.9e-166 587.8 511 59.9
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 2.1e-163 579.7 509 61.3
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 2.4e-162 576.2 509 61.3
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 5.3e-162 575.1 510 60.8
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.4e-159 567.0 505 59.4
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 2.3e-157 559.7 508 58.3
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 5.1e-157 558.5 508 57.9
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 4.8e-155 552.0 509 58.3
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 1.4e-154 550.4 503 57.1
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 2.4e-154 549.7 509 57.4
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 2.6e-153 546.2 505 57.4
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 2.5e-151 539.7 503 55.9
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 2.3e-149 533.1 513 57.1
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 1.1e-148 530.8 511 57.5
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 1.5e-148 530.4 506 57.1
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 7.4e-148 528.1 499 56.5
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.3e-147 527.3 490 55.7
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.2e-147 526.6 490 55.7
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 9.0e-146 521.2 503 56.7
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 1.0e-144 517.7 429 64.8
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 1.7e-144 516.9 513 56.5
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 7.9e-142 508.1 512 54.9
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 3.9e-141 505.8 436 62.6
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 1.1e-140 504.2 510 54.5
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 4.3e-140 502.3 508 53.3
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 4.3e-140 502.3 423 61.2
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 3.7e-139 499.2 506 53.6
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 5.3e-138 495.4 505 52.7
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.5e-137 493.8 505 54.1
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 1.0e-133 481.1 501 52.3
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 1.4e-133 480.7 507 52.5
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 2.3e-133 479.9 512 50.4
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 1.7e-131 473.8 502 51.0
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 2.2e-131 473.4 502 51.2
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 3.7e-131 472.6 511 52.4
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 1.1e-130 471.1 501 52.3
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 1.5e-129 467.2 502 50.4
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 2.0e-129 466.8 501 51.7
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 1.0e-128 464.5 522 50.0
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 1.0e-128 464.5 505 50.7
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 1.3e-128 464.2 504 50.2
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 2.9e-128 463.0 505 50.5
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 2.9e-128 463.0 501 51.9
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 5.0e-128 462.2 502 51.6
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 5.0e-128 462.2 491 51.1
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 1.1e-127 461.1 503 49.7
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 1.6e-126 457.2 418 60.5
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 2.3e-125 453.4 506 48.8
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 5.2e-125 452.2 509 52.8
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 1.5e-124 450.7 510 49.8
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 1.1e-122 444.5 511 50.5
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 1.6e-121 440.7 509 49.3
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 1.6e-121 440.7 511 48.3
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.0e-121 440.3 421 54.9
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.6e-121 439.9 421 54.9
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.1e-119 434.5 416 56.2
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 8.0e-118 428.3 503 49.1
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 5.9e-113 412.1 448 49.6
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 2.5e-111 406.8 517 47.4
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 1.4e-109 401.0 520 45.4
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 8.8e-109 398.3 512 46.5
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.9e-103 380.6 364 59.1
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 3.0e-101 373.2 419 48.9
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.2e-101 372.5 301 60.5
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 1.4e-98 364.4 412 47.8
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 1.2e-94 351.3 511 41.3
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 5.2e-93 345.9 468 46.4
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 7.0e-90 335.5 420 46.7
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 8.0e-86 322.0 242 64.0
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 5.2e-77 292.7 559 35.1
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 2.4e-69 267.3 564 34.0
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 2.4e-69 267.3 509 36.7
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 4.6e-65 253.1 432 38.2
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.3e-40 171.8 167 55.7
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 7.6e-36 156.0 478 27.6
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 8.7e-32 142.5 113 63.7
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 1.0e-27 129.0 441 27.4
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 3.8e-11 73.9 514 23.7
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 7.2e-10 69.7 251 31.1


User provided reference genes

Program Settings