Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.1e-228 796.2 394 100.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.8e-192 674.9 398 82.9
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.4e-170 603.2 384 76.8
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 2.1e-166 589.3 381 76.9
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.2e-166 587.8 384 75.0
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 6.2e-166 587.8 386 76.4
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 6.2e-166 587.8 386 75.4
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.5e-164 583.2 385 75.8
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.3e-163 580.1 389 75.6
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 6.4e-163 577.8 402 72.9
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 8.4e-163 577.4 402 72.1
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.9e-162 576.2 385 75.1
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 3.2e-162 575.5 384 75.5
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 9.2e-162 573.9 386 73.3
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 3.5e-161 572.0 384 73.7
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 6.0e-161 571.2 402 70.9
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.3e-160 570.1 392 71.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.3e-160 570.1 384 73.4
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.3e-160 570.1 386 71.2
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 5.1e-160 568.2 402 70.6
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 8.6e-160 567.4 384 73.7
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.6e-159 564.7 383 74.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.2e-158 563.5 384 72.7
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.1e-158 562.8 385 73.2
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.7e-158 561.6 380 73.4
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 6.2e-158 561.2 384 72.9
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.4e-157 559.3 384 72.9
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.0e-156 556.2 384 72.4
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 4.4e-156 555.1 389 73.3
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.8e-156 554.7 383 72.6
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.3e-155 553.5 386 71.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.2e-155 552.7 390 73.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 2.9e-155 552.4 368 74.2
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.9e-155 551.6 386 70.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 8.4e-155 550.8 386 70.7
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.1e-154 550.4 406 68.7
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 3.2e-154 548.9 385 71.4
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.2e-153 547.0 384 72.1
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.2e-153 547.0 384 71.1
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 3.5e-153 545.4 403 69.2
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.5e-153 545.4 382 72.3
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.3e-152 543.5 383 69.5
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 6.6e-152 541.2 387 71.1
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.5e-151 540.0 384 71.6
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.5e-151 540.0 382 71.7
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 4.3e-151 538.5 382 71.7
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.6e-151 538.1 388 69.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 5.6e-151 538.1 380 69.2
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.1e-150 536.2 394 68.8
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 3.6e-150 535.4 382 70.9
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.8e-149 533.1 373 72.1
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.8e-149 533.1 383 71.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 5.3e-149 531.6 384 68.0
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 6.9e-149 531.2 355 73.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-148 530.4 398 68.1
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.2e-148 530.4 409 65.3
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 2.0e-148 529.6 385 68.6
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 3.4e-148 528.9 384 71.4
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 3.4e-148 528.9 382 70.7
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 8.4e-147 524.2 379 68.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.9e-146 523.1 382 70.4
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 2.4e-146 522.7 387 67.2
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 3.2e-146 522.3 392 68.6
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 5.4e-146 521.5 387 67.2
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 5.4e-146 521.5 388 67.3
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.2e-145 520.4 382 69.6
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 2.1e-145 519.6 382 69.9
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 2.7e-145 519.2 388 67.3
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 3.9e-144 515.4 393 65.9
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 5.1e-144 515.0 373 72.1
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.5e-143 513.5 390 67.2
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.5e-143 512.7 384 66.9
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 4.8e-142 508.4 385 66.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.1e-141 507.3 394 65.0
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.1e-141 505.8 339 75.2
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.4e-140 502.3 385 65.5
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.2e-139 499.6 387 67.2
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 3.2e-138 495.7 386 64.2
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 7.9e-137 491.1 374 66.3
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.0e-136 490.7 363 68.9
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.3e-136 490.3 392 65.6
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.0e-136 489.2 387 64.1
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 5.1e-136 488.4 386 63.5
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.5e-135 486.9 386 63.2
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 7.4e-135 484.6 372 66.4
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 2.8e-134 482.6 386 63.5
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.7e-134 482.3 383 63.7
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.7e-134 482.3 383 63.7
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.4e-133 480.3 414 60.4
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 4.0e-133 478.8 422 60.2
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 9.0e-133 477.6 362 66.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.6e-132 476.1 348 69.3
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 8.7e-128 461.1 388 62.4
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 9.0e-125 451.1 336 69.0
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 3.0e-120 436.0 323 67.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.4e-116 422.5 361 59.0
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 9.4e-114 414.5 371 59.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.2e-110 403.3 258 75.2
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.0e-107 394.4 325 61.5
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 2.1e-105 386.7 246 75.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 5.0e-99 365.5 382 52.1
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.4e-93 347.4 265 66.8
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.5e-90 336.7 265 63.0
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 4.4e-87 325.9 317 54.9
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.4e-85 320.1 197 77.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 6.5e-83 312.0 186 76.9
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 6.3e-78 295.4 158 88.0
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 7.3e-74 282.0 246 61.8
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.4e-71 273.1 215 67.4
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.7e-67 260.8 275 46.2
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.5e-63 247.7 182 64.8
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.5e-63 247.7 177 67.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.1e-58 231.5 125 85.6
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 6.2e-57 225.7 217 50.2
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.5e-50 203.8 185 57.3
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 6.8e-48 195.7 183 50.8
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 3.8e-46 189.9 108 79.6
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.1e-44 184.1 160 60.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.3e-42 176.8 124 71.8
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 8.1e-41 172.2 133 63.2
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 9.0e-40 168.7 133 62.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.2e-36 158.3 125 62.4
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.3e-35 154.8 185 50.8
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 5.6e-34 149.4 200 43.0
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.6e-33 147.9 138 58.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 8.4e-30 135.6 243 37.0
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 2.7e-28 130.6 84 72.6
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.3e-27 128.3 113 61.1
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.1e-24 117.1 75 72.0
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 4.0e-24 116.7 109 56.0
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.6e-23 114.0 71 76.1
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.5e-23 113.2 63 82.5
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.1e-16 92.0 91 57.1
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.1e-13 82.0 58 70.7
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.3e-10 70.1 105 41.0
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 4.3e-10 70.1 40 82.5
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.8e-08 64.7 40 75.0
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 1.3e-06 58.5 34 76.5


User provided reference genes

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