Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.5e-70 267.7 125 100.0
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.7e-50 200.7 124 76.6
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.8e-47 192.6 124 75.8
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-47 191.8 124 74.2
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-46 189.5 121 76.0
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 7.2e-44 180.6 124 72.6
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-43 179.9 124 71.8
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.0e-42 176.8 124 71.8
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.0e-42 176.8 124 71.8
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.0e-42 176.8 124 71.0
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.0e-42 176.8 124 71.0
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.0e-42 176.8 124 71.0
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.4e-42 176.4 124 71.0
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.4e-42 176.4 124 71.0
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-42 175.6 124 70.2
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-42 175.6 124 70.2
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-42 175.6 124 70.2
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-42 175.6 124 70.2
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-42 175.6 124 70.2
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-42 175.6 124 70.2
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-42 175.6 124 70.2
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 6.8e-42 174.1 124 70.2
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.2e-41 173.3 104 78.8
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 1.5e-41 172.9 124 69.4
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-41 172.9 124 70.2
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-41 172.9 124 70.2
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-41 172.9 124 70.2
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-41 172.9 124 70.2
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 1.5e-41 172.9 124 69.4
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 2.0e-41 172.6 124 69.4
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 2.0e-41 172.6 124 69.4
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 2.0e-41 172.6 124 69.4
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 2.6e-41 172.2 124 70.2
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 3.4e-41 171.8 124 69.4
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.4e-41 171.8 124 69.4
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 3.4e-41 171.8 124 69.4
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.4e-41 171.8 124 69.4
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 4.4e-41 171.4 124 69.4
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 7.5e-41 170.6 124 68.5
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 7.5e-41 170.6 124 68.5
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 7.5e-41 170.6 124 68.5
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 7.5e-41 170.6 124 68.5
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 7.5e-41 170.6 124 68.5
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 7.5e-41 170.6 124 68.5
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 9.8e-41 170.2 124 67.7
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.3e-40 169.9 124 68.5
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.3e-40 169.9 124 68.5
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 66.9
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 68.5
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 68.5
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 2.2e-40 169.1 124 68.5
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 2.8e-40 168.7 144 61.1
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.8e-40 167.9 102 79.4
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 4.8e-40 167.9 106 78.3
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-39 166.8 125 67.2
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-39 166.8 124 68.5
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.8e-39 166.0 119 69.7
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.8e-39 166.0 106 77.4
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 3.1e-39 165.2 124 66.1
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 5.4e-39 164.5 124 66.1
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.7e-38 162.2 141 60.3
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 4.5e-38 161.4 114 70.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.9e-37 158.7 102 76.5
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.8e-37 158.3 97 78.4
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 8.6e-37 157.1 115 69.6
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.5e-36 156.4 102 74.5
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.5e-36 156.4 102 74.5
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 2.5e-36 155.6 102 74.5
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 5.5e-36 154.5 124 62.1
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 2.1e-35 152.5 114 68.4
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.0e-34 150.2 110 69.1
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-34 149.8 104 71.2
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 4.0e-34 148.3 97 76.3
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.2e-33 146.7 143 54.5
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.0e-33 146.0 92 77.2
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 8.3e-32 140.6 93 72.0
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 8.3e-32 140.6 124 61.3
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 8.3e-32 140.6 98 71.4
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.1e-31 140.2 91 73.6
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-31 140.2 98 71.4
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 1.4e-31 139.8 92 72.8
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-31 139.8 92 72.8
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-31 139.8 94 71.3
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 1.4e-31 139.8 94 71.3
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 1.8e-31 139.4 94 71.3
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.4e-31 139.0 91 73.6
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 4.1e-31 138.3 93 71.0
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 5.4e-31 137.9 95 72.6
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 1.6e-30 136.3 121 61.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.5e-30 135.2 83 78.3
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 2.3e-29 132.5 106 60.4
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 4.3e-28 128.3 91 71.4
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.6e-27 125.2 75 81.3
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 8.0e-27 124.0 72 83.3
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 8.0e-27 124.0 98 65.3
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 8.0e-27 124.0 98 68.4
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 1.8e-26 122.9 92 65.2
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 8.9e-26 120.6 81 72.8
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 1.2e-25 120.2 97 67.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.0e-25 119.4 90 67.8
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 2.4e-23 112.5 82 69.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 3.2e-23 112.1 69 79.7
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 9.2e-23 110.5 79 68.4
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 4.6e-22 108.2 69 72.5
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 7.8e-22 107.5 65 78.5
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 1.3e-21 106.7 65 78.5
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 6.6e-21 104.4 107 53.3
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 7.3e-20 100.9 58 77.6
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 9.5e-20 100.5 90 55.6
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.2e-19 100.1 88 55.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.2e-19 100.1 88 55.7
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-19 100.1 60 76.7
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 3.6e-19 98.6 76 61.8
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 2.3e-18 95.9 121 43.8
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 3.1e-18 95.5 56 76.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 6.8e-18 94.4 56 75.0
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 6.8e-18 94.4 56 75.0
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 6.8e-18 94.4 56 75.0
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 4.4e-17 91.7 75 64.0
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.7e-16 89.7 98 52.0
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 6.4e-16 87.8 48 79.2
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 1.4e-15 86.7 124 41.9
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 2.4e-15 85.9 107 48.6
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 4.1e-15 85.1 87 57.5
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.0e-14 81.3 76 56.6
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-13 80.1 53 71.7
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-13 80.1 53 71.7
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-13 80.1 53 71.7
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.7e-13 79.7 53 73.6
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.7e-13 79.7 49 71.4
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 8.6e-13 77.4 53 69.8
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 5.6e-12 74.7 43 86.0
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 5.6e-12 74.7 49 65.3
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.8e-11 72.4 58 62.1
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 8.1e-11 70.9 35 85.7
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.8e-10 69.7 47 70.2
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.3e-10 69.3 48 70.8
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 5.2e-10 68.2 64 51.6
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 6.8e-10 67.8 125 35.2
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 8.9e-10 67.4 45 68.9
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 4.4e-09 65.1 67 52.2
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 7.8e-06 54.3 31 74.2


User provided reference genes

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