Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.2e-50 203.0 114 100.0
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.9e-27 125.9 112 61.6
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 2.5e-27 125.6 111 59.5
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 7.3e-27 124.0 112 62.5
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.6e-26 122.9 111 60.4
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 4.7e-26 121.3 112 61.6
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 4.7e-26 121.3 110 59.1
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 6.2e-26 120.9 111 58.6
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 8.1e-26 120.6 113 62.8
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 3.1e-25 118.6 100 63.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 5.2e-25 117.9 110 57.3
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 6.9e-25 117.5 103 64.1
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-24 116.3 99 61.6
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.5e-24 116.3 108 59.3
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 2.0e-24 115.9 111 57.7
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 2.6e-24 115.5 103 60.2
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 3.4e-24 115.2 103 62.1
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 3.4e-24 115.2 103 61.2
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 4.4e-24 114.8 111 60.4
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 4.4e-24 114.8 111 55.9
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 5.8e-24 114.4 111 56.8
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 5.8e-24 114.4 111 56.8
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 7.6e-24 114.0 105 63.8
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 3.8e-23 111.7 101 56.4
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.1e-22 110.2 102 56.9
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 1.4e-22 109.8 110 54.5
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 1.9e-22 109.4 104 58.7
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.4e-22 109.0 100 55.0
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 3.2e-22 108.6 100 55.0
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 4.2e-22 108.2 101 60.4
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 7.1e-22 107.5 105 54.3
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 7.1e-22 107.5 105 54.3
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 7.1e-22 107.5 105 54.3
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 9.3e-22 107.1 101 57.4
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 1.2e-21 106.7 102 59.8
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 1.6e-21 106.3 103 62.1
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 2.1e-21 105.9 106 53.8
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.7e-21 105.5 105 52.4
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 3.5e-21 105.1 98 57.1
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 6.0e-21 104.4 105 51.4
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.3e-20 103.2 104 52.9
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.3e-20 103.2 111 53.2
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 3.9e-20 101.7 100 60.0
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.1e-19 100.1 104 52.9
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.5e-19 99.8 111 59.5
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 1.9e-19 99.4 103 55.3
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.9e-19 99.4 107 53.3
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.9e-19 99.4 107 53.3
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.3e-19 98.6 101 54.5
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 3.3e-19 98.6 101 54.5
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 4.3e-19 98.2 109 52.3
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 7.3e-19 97.4 100 56.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 7.3e-19 97.4 100 56.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 7.3e-19 97.4 100 56.0
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 7.3e-19 97.4 100 56.0
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 7.3e-19 97.4 107 54.2
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.3e-18 96.7 100 56.0
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.6e-18 96.3 101 52.5
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 4.8e-18 94.7 104 51.0
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.1e-17 93.6 91 56.0
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 1.4e-17 93.2 88 56.8
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.8e-17 92.8 107 53.3
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 1.8e-17 92.8 113 48.7
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.4e-17 92.4 101 49.5
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 4.0e-17 91.7 105 47.6
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 5.3e-17 91.3 112 50.0
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 6.9e-17 90.9 94 60.6
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 9.0e-17 90.5 110 47.3
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 1.2e-16 90.1 104 47.1
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.2e-16 90.1 103 56.3
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 1.5e-16 89.7 104 51.0
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 2.0e-16 89.4 104 50.0
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 2.0e-16 89.4 99 46.5
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 3.4e-16 88.6 93 52.7
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 3.4e-16 88.6 100 49.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 4.5e-16 88.2 100 58.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 7.6e-16 87.4 102 44.1
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 9.9e-16 87.0 101 46.5
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.3e-15 86.7 106 44.3
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.7e-15 86.3 100 58.0
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 2.2e-15 85.9 100 49.0
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.4e-15 84.0 100 48.0
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.9e-14 82.8 112 51.8
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.9e-14 82.8 101 48.5
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 4.2e-14 81.6 104 51.0
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.2e-13 80.1 111 50.5
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 1.2e-13 80.1 101 46.5
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 1.6e-13 79.7 101 40.6
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 2.7e-13 79.0 106 45.3
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 4.6e-13 78.2 83 54.2
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.0e-12 77.0 77 54.5
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.8e-12 76.3 93 55.9
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.1e-11 73.6 105 41.9
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 1.3e-10 70.1 135 42.2
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-08 63.2 75 46.7
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 3.8e-07 58.5 38 65.8
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 1.1e-06 57.0 44 56.8
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 3.2e-06 55.5 70 44.3


User provided reference genes

Program Settings