Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 5.6e-62 240.7 119 100.0
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 5.0e-18 94.7 94 61.7
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 2.5e-17 92.4 93 58.1
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 2.7e-16 89.0 93 58.1
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 4.6e-16 88.2 91 62.6
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 1.0e-15 87.0 104 54.8
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 8.8e-15 84.0 89 58.4
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 1.1e-14 83.6 97 56.7
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 9.7e-14 80.5 93 52.7
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 6.3e-13 77.8 93 51.6
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 3.1e-12 75.5 88 54.5
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 9.1e-12 73.9 96 53.1
Glyma.17G117900 Glycine max HOM05D003010 ORTHO05D010439 2.6e-11 72.4 91 47.3
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 2.6e-11 72.4 93 51.6
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 2.6e-11 72.4 96 50.0
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 5.9e-11 71.2 96 43.8
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 5.9e-11 71.2 96 43.8
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 1.7e-10 69.7 95 51.6
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 2.9e-10 68.9 86 51.2
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 3.8e-10 68.6 101 43.6
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 5.0e-10 68.2 98 44.9
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 8.5e-10 67.4 100 46.0
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.5e-10 67.4 92 47.8
Sc18g0000820 Simmondsia chinensis HOM05D003010 ORTHO05D010439 8.5e-10 67.4 93 43.0
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 8.5e-10 67.4 97 48.5
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.9e-09 66.2 95 48.4
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.5e-09 65.9 97 45.4
Eucgr.C01116 Eucalyptus grandis HOM05D009305 ORTHO05D010439 3.2e-09 65.5 91 50.5
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 4.2e-09 65.1 96 46.9
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.2e-09 65.1 95 47.4
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 5.5e-09 64.7 93 48.4
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 5.5e-09 64.7 93 48.4
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 5.5e-09 64.7 93 48.4
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 7.2e-09 64.3 94 44.7
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 7.2e-09 64.3 94 45.7
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.4e-09 63.9 96 44.8
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 9.4e-09 63.9 100 42.0
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 9.4e-09 63.9 100 42.0
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 1.2e-08 63.5 89 47.2
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 1.2e-08 63.5 91 47.3
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.6e-08 63.2 93 46.2
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 2.7e-08 62.4 93 46.2
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 6.1e-08 61.2 99 44.4
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.0e-07 60.5 93 41.9
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 1.0e-07 60.5 99 44.4
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.4e-07 60.1 95 42.1
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.4e-07 60.1 93 43.0
Gohir.A08G239500 Gossypium hirsutum HOM05D029830 ORTHO05D010439 2.3e-07 59.3 97 45.4
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 3.0e-07 58.9 96 45.8
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 5.1e-07 58.2 99 36.4
CsaV3_1G029730 Cucumis sativus L. HOM05D003010 ORTHO05D010439 5.1e-07 58.2 87 48.3
Gorai.004G278100 Gossypium raimondii HOM05D029830 ORTHO05D010439 5.1e-07 58.2 97 44.3
SGA_v2.0_scaffold90G27813 Striga asiatica HOM05D009305 ORTHO05D010439 5.1e-07 58.2 95 43.2
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 8.8e-07 57.4 94 42.6
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 1.1e-06 57.0 90 38.9
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 2.0e-06 56.2 89 38.2
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 2.0e-06 56.2 97 35.1
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 2.0e-06 56.2 99 34.3
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 2.0e-06 56.2 93 40.9
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 2.6e-06 55.8 87 40.2
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 2.6e-06 55.8 92 44.6
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 3.3e-06 55.5 98 43.9
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 3.3e-06 55.5 94 36.2
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 3.3e-06 55.5 99 36.4
Sed0015404 Sechium edule HOM05D009305 ORTHO05D010439 3.3e-06 55.5 91 47.3
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 3.3e-06 55.5 97 36.1
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 4.4e-06 55.1 103 37.9
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.4e-06 55.1 97 40.2
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 5.7e-06 54.7 102 36.3
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 7.4e-06 54.3 55 58.2
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 7.4e-06 54.3 55 58.2
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 7.4e-06 54.3 55 58.2
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 7.4e-06 54.3 101 39.6
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 9.7e-06 53.9 99 38.4
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 9.7e-06 53.9 101 39.6
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 9.7e-06 53.9 94 33.0
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 9.7e-06 53.9 94 33.0
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 9.7e-06 53.9 98 37.8
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 9.7e-06 53.9 99 37.4


User provided reference genes

Program Settings