Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 2.7e-21 104.4 51 100.0
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 5.2e-17 90.1 51 84.3
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 5.2e-17 90.1 51 84.3
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 5.2e-17 90.1 51 84.3
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 6.8e-17 89.7 51 82.4
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 7.6e-16 86.3 51 80.4
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.7e-15 85.1 51 76.5
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 4.9e-15 83.6 54 81.5
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.4e-15 82.8 51 72.5
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.1e-14 82.4 51 72.5
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 1.9e-14 81.6 43 90.7
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 1.9e-14 81.6 54 75.9
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 3.2e-14 80.9 53 79.2
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 3.2e-14 80.9 52 76.9
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 4.2e-14 80.5 52 76.9
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 5.4e-14 80.1 54 77.8
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 7.1e-14 79.7 52 76.9
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 9.2e-14 79.3 52 73.1
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 1.2e-13 79.0 51 74.5
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.6e-13 78.6 52 75.0
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.7e-13 77.8 52 75.0
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 3.5e-13 77.4 53 73.6
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 4.6e-13 77.0 52 73.1
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 4.6e-13 77.0 54 77.8
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 7.8e-13 76.3 52 71.2
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 7.8e-13 76.3 52 67.3
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 1.3e-12 75.5 52 71.2
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 1.3e-12 75.5 52 71.2
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 1.7e-12 75.1 56 75.0
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 1.7e-12 75.1 52 71.2
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 1.7e-12 75.1 43 83.7
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 2.3e-12 74.7 51 74.5
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 3.9e-12 73.9 49 69.4
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 5.1e-12 73.6 51 74.5
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 5.1e-12 73.6 51 74.5
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 6.6e-12 73.2 42 83.3
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 1.9e-11 71.6 52 69.2
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 2.5e-11 71.2 49 71.4
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.5e-11 71.2 52 69.2
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.3e-11 70.5 52 73.1
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 4.3e-11 70.5 53 71.7
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 9.6e-11 69.3 52 67.3
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 1.3e-10 68.9 53 67.9
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.1e-10 68.2 52 69.2
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 2.8e-10 67.8 53 69.8
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 2.8e-10 67.8 54 70.4
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.6e-10 67.4 52 69.2
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 3.6e-10 67.4 50 66.0
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 4.8e-10 67.0 53 71.7
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 4.8e-10 67.0 53 69.8
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 4.8e-10 67.0 53 69.8
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 4.8e-10 67.0 53 69.8
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 4.8e-10 67.0 53 69.8
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.8e-10 67.0 51 68.6
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.8e-10 67.0 52 69.2
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 6.2e-10 66.6 53 69.8
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.4e-09 65.5 53 69.8
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 4.0e-09 63.9 53 66.0
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 6.9e-09 63.2 53 66.0
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 9.0e-09 62.8 48 60.4
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 9.0e-09 62.8 47 63.8
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 2.0e-08 61.6 60 56.7
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 2.0e-08 61.6 60 56.7
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 2.6e-08 61.2 45 62.2
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 2.6e-08 61.2 60 55.0
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 2.6e-08 61.2 43 67.4
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 5.8e-08 60.1 44 68.2
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 1.3e-07 58.9 39 71.8
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.2e-07 58.2 36 80.6
DCAR_000681 Daucus carota HOM05D007824 ORTHO05D009875 2.9e-07 57.8 52 63.5
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 1.9e-06 55.1 41 63.4
Mapoly0056s0140 Marchantia polymorpha HOM05D007824 ORTHO05D009875 2.4e-06 54.7 39 66.7
Carub.0006s2284 Capsella rubella HOM05D007824 ORTHO05D009875 4.2e-06 53.9 39 66.7
Solyc08g068930.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 4.2e-06 53.9 36 72.2
COL.COLO4_18990 Corchorus olitorius HOM05D007824 ORTHO05D009875 7.1e-06 53.1 48 62.5
Aa31LG11G4150 Aethionema arabicum HOM05D007824 ORTHO05D009875 9.3e-06 52.8 39 64.1
AL6G36640 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 9.3e-06 52.8 39 64.1


User provided reference genes

Program Settings