Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.5e-36 155.6 73 100.0
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 4.2e-36 154.1 73 98.6
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 4.7e-35 150.6 73 97.3
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 2.4e-31 138.3 73 86.3
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 5.3e-31 137.1 73 82.2
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 5.3e-31 137.1 73 84.9
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 5.3e-31 137.1 73 86.3
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 9.1e-31 136.3 73 84.9
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 1.2e-30 136.0 73 83.6
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.2e-30 136.0 73 83.6
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 1.2e-30 136.0 73 83.6
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.6e-30 135.6 73 83.6
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 1.6e-30 135.6 73 83.6
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 2.7e-30 134.8 73 83.6
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.7e-30 134.8 73 82.2
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 2.7e-30 134.8 73 84.9
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 2.7e-30 134.8 73 80.8
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 2.7e-30 134.8 73 84.9
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 3.5e-30 134.4 72 84.7
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 3.5e-30 134.4 73 82.2
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 3.5e-30 134.4 73 82.2
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 4.5e-30 134.0 73 82.2
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 4.5e-30 134.0 73 83.6
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 5.9e-30 133.7 73 82.2
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 79.5
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 80.8
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 79.5
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 80.8
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 1.3e-29 132.5 73 83.6
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 1.7e-29 132.1 73 79.5
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 2.2e-29 131.7 73 79.5
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 2.9e-29 131.3 73 83.6
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 80.8
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 82.2
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 82.2
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 78.1
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 6.5e-29 130.2 73 82.2
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 6.5e-29 130.2 73 83.6
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 6.5e-29 130.2 73 82.2
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 6.5e-29 130.2 73 78.1
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 8.5e-29 129.8 73 79.5
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.5e-29 129.8 73 78.1
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 8.5e-29 129.8 73 78.1
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.1e-28 129.4 73 82.2
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 1.1e-28 129.4 71 78.9
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 1.5e-28 129.0 73 83.6
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.5e-28 129.0 73 79.5
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.9e-28 128.6 73 78.1
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 1.9e-28 128.6 73 79.5
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.9e-28 128.6 73 79.5
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.9e-28 128.6 72 81.9
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 2.5e-28 128.3 73 76.7
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 2.5e-28 128.3 73 80.8
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 2.5e-28 128.3 73 80.8
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 78.1
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 78.1
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 78.1
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 78.1
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 78.1
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 76.7
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 76.7
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 74.0
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 79.5
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 76.7
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 76.7
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 76.7
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 78.1
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 80.8
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 79.5
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 5.5e-28 127.1 73 78.1
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 7.2e-28 126.7 73 76.7
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 7.2e-28 126.7 73 76.7
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 75.3
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 76.7
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 76.7
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 76.7
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 78.1
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 1.6e-27 125.6 73 76.7
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 1.6e-27 125.6 73 72.6
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 2.1e-27 125.2 73 78.1
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 2.1e-27 125.2 73 79.5
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 2.1e-27 125.2 73 78.1
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 2.1e-27 125.2 94 63.8
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.1e-27 125.2 73 75.3
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 2.7e-27 124.8 73 76.7
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 2.7e-27 124.8 70 77.1
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 2.7e-27 124.8 73 79.5
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 79.5
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 78.1
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 6.1e-27 123.6 73 75.3
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 8.0e-27 123.2 73 75.3
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 8.0e-27 123.2 73 75.3
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 8.0e-27 123.2 73 74.0
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 8.0e-27 123.2 73 74.0
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.4e-26 122.5 73 76.7
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.8e-26 122.1 73 75.3
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.3e-26 121.7 73 71.2
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 72.6
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 72.6
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 72.6
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 72.6
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 75.3
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.2e-26 120.6 72 73.6
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 5.2e-26 120.6 70 78.6
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 5.2e-26 120.6 73 74.0
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 8.8e-26 119.8 73 72.6
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 1.2e-25 119.4 73 72.6
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 1.5e-25 119.0 73 75.3
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 2.0e-25 118.6 73 72.6
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 2.0e-25 118.6 73 72.6
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 2.6e-25 118.2 73 72.6
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 2.6e-25 118.2 73 72.6
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 2.6e-25 118.2 73 72.6
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 2.6e-25 118.2 73 72.6
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 2.6e-25 118.2 73 69.9
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 3.4e-25 117.9 73 71.2
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 5.7e-25 117.1 73 72.6
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 5.7e-25 117.1 73 72.6
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 5.7e-25 117.1 73 72.6
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 5.7e-25 117.1 73 74.0
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 7.5e-25 116.7 73 74.0
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 7.5e-25 116.7 73 71.2
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 2.2e-24 115.2 73 67.1
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 2.8e-24 114.8 73 71.2
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 6.3e-24 113.6 73 74.0
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.4e-23 112.5 69 72.5
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 1.8e-23 112.1 73 69.9
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 5.4e-23 110.5 57 86.0
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 9.1e-23 109.8 56 87.5
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 9.1e-23 109.8 61 82.0
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.6e-22 109.0 94 56.4
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 2.7e-22 108.2 70 68.6
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 3.5e-22 107.8 57 82.5
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 4.5e-22 107.5 103 53.4
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 5.9e-22 107.1 58 81.0
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 1.7e-21 105.5 73 64.4
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 2.3e-21 105.1 56 83.9
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 6.6e-21 103.6 58 77.6
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 1.9e-20 102.1 57 82.5
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.2e-20 100.9 56 80.4
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 9.5e-20 99.8 53 86.8
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 2.8e-19 98.2 57 73.7
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 3.6e-19 97.8 62 74.2
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 3.6e-19 97.8 57 77.2
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 6.1e-19 97.1 73 56.2
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.8e-18 95.5 73 54.8
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.3e-18 95.1 73 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 3.0e-18 94.7 73 58.9
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 7.5e-17 90.1 57 71.9
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 1.7e-16 89.0 52 73.1
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 3.7e-16 87.8 52 73.1
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 1.2e-14 82.8 52 67.3
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 2.0e-14 82.0 69 59.4
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 2.0e-14 82.0 53 62.3
DCAR_023068 Daucus carota HOM05D004391 ORTHO05D005193 1.0e-13 79.7 74 54.1
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 49.3
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 5.0e-13 77.4 66 59.1
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 6.6e-13 77.0 67 46.3
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 1.2e-11 72.8 73 49.3
Oeu007160.1 Olea europaea HOM05D004391 ORTHO05D005193 2.8e-11 71.6 55 65.5
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 3.6e-11 71.2 68 45.6
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 1.0e-10 69.7 71 43.7
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 4.0e-10 67.8 38 76.3
PRCOL_00006067 Prasinoderma coloniale HOM05D004391 ORTHO05D005193 1.7e-08 62.4 73 39.7
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 1.4e-07 59.3 66 43.9
MCO15G410 Micromonas commoda HOM05D004391 ORTHO05D005193 9.2e-07 56.6 74 40.5


User provided reference genes

Program Settings