Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010049m.g Citrus clementina HOM05D000050 ORTHO05D152374 1.1e-38 162.9 88 100.0
Ciclev10012469m.g Citrus clementina HOM05D000050 ORTHO05D006094 3.0e-36 154.8 88 95.5
Ciclev10029697m.g Citrus clementina HOM05D000050 ORTHO05D152433 6.7e-36 153.7 88 95.5
PGR142G1375 Punica granatum HOM05D000050 ORTHO05D006094 1.3e-15 86.3 88 59.1
Atru.chr8.916 Acer truncatum HOM05D000050 ORTHO05D006094 2.9e-15 85.1 83 65.1
CiPaw.09G161800 Carya illinoinensis HOM05D000050 ORTHO05D006094 1.1e-14 83.2 88 64.8
Sabra16G0030700 Salix brachista HOM05D000050 ORTHO05D006094 1.9e-14 82.4 87 58.6
CiPaw.10G122100 Carya illinoinensis HOM05D000050 ORTHO05D006094 2.5e-14 82.0 87 59.8
QL07p015372 Quercus lobata HOM05D000050 ORTHO05D006094 2.5e-14 82.0 88 58.0
CSS0002447 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006094 3.6e-13 78.2 89 56.2
Potri.016G024800 Populus trichocarpa HOM05D000050 ORTHO05D006094 4.6e-13 77.8 78 60.3
Manes.02G219500 Manihot esculenta HOM05D000050 ORTHO05D006094 3.9e-12 74.7 90 55.6
TWI53G0709 Tripterygium wilfordii HOM05D000050 ORTHO05D006094 5.1e-12 74.3 89 56.2
Dinv02783 Davidia involucrata HOM05D000050 ORTHO05D006094 6.7e-12 73.9 74 64.9
Thecc.05G130500 Theobroma cacao HOM05D000050 ORTHO05D006094 6.7e-12 73.9 80 60.0
CAN.G128.107 Capsicum annuum HOM05D000050 ORTHO05D006094 1.1e-11 73.2 88 54.5
Nitab4.5_0005702g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006094 2.0e-11 72.4 88 53.4
Manes.09G074400 Manihot esculenta HOM05D000050 ORTHO05D006094 2.5e-11 72.0 89 58.4
PGSC0003DMG400028110 Solanum tuberosum HOM05D000050 ORTHO05D006094 4.3e-11 71.2 88 54.5
Haze_20344 Corylus avellana HOM05D000050 ORTHO05D006094 5.7e-11 70.9 93 52.7
Sopen10g031660 Solanum pennellii HOM05D000050 ORTHO05D006094 5.7e-11 70.9 88 54.5
Potri.006G026900 Populus trichocarpa HOM05D000050 ORTHO05D006094 7.4e-11 70.5 87 54.0
Solyc10g081160.2 Solanum lycopersicum HOM05D000050 ORTHO05D006094 7.4e-11 70.5 88 53.4
Sed0007736 Sechium edule HOM05D000050 ORTHO05D006094 9.7e-11 70.1 87 55.2
Nitab4.5_0000062g0370 Nicotiana tabacum HOM05D000050 ORTHO05D006094 1.3e-10 69.7 88 52.3
Actinidia37861 Actinidia chinensis HOM05D000050 ORTHO05D006094 1.7e-10 69.3 90 52.2
Sabra06G0019800 Salix brachista HOM05D000050 ORTHO05D006094 1.7e-10 69.3 87 51.7
FAN26G1674 Fragaria x ananassa HOM05D000050 ORTHO05D006094 2.2e-10 68.9 90 56.7
ECA246G3238 Erigeron canadensis HOM05D000050 ORTHO05D006094 2.8e-10 68.6 87 54.0
CANSAT21G2133 Cannabis sativa HOM05D000050 ORTHO05D006094 6.3e-10 67.4 68 60.3
AUR62018450 Chenopodium quinoa HOM05D000050 ORTHO05D006094 6.3e-10 67.4 90 52.2
AUR62044412 Chenopodium quinoa HOM05D000050 ORTHO05D039035 6.3e-10 67.4 90 52.2
Duzib128G0594 Durio zibethinus HOM05D000050 ORTHO05D006094 6.3e-10 67.4 85 54.1
FvH4_1g29560 Fragaria vesca HOM05D000050 ORTHO05D006094 6.3e-10 67.4 90 55.6
FAN19G1441 Fragaria x ananassa HOM05D000050 ORTHO05D006094 6.3e-10 67.4 90 55.6
FAN23G0798 Fragaria x ananassa HOM05D000050 ORTHO05D006094 6.3e-10 67.4 90 55.6
Gohir.A11G305200 Gossypium hirsutum HOM05D000050 ORTHO05D006094 8.2e-10 67.0 89 52.8
Oeu044221.1 Olea europaea HOM05D000050 ORTHO05D006094 8.2e-10 67.0 87 54.0
Cc06_g22700 Coffea canephora HOM05D000050 ORTHO05D006094 1.4e-09 66.2 83 54.2
ClCG04G004980 Citrullus lanatus HOM05D000050 ORTHO05D006094 1.8e-09 65.9 78 53.8
Gohir.D11G320600 Gossypium hirsutum HOM05D000050 ORTHO05D006094 1.8e-09 65.9 91 50.5
Gorai.007G350800 Gossypium raimondii HOM05D000050 ORTHO05D006094 1.8e-09 65.9 91 50.5
Duzib093G1108 Durio zibethinus HOM05D000050 ORTHO05D006094 3.1e-09 65.1 91 53.8
Eucgr.K01701 Eucalyptus grandis HOM05D000050 ORTHO05D006094 5.3e-09 64.3 88 48.9
MD14G1093100 Malus domestica HOM05D000050 ORTHO05D006094 6.9e-09 63.9 91 52.7
MD12G1099900 Malus domestica HOM05D000050 ORTHO05D006094 1.2e-08 63.2 85 55.3
TWI74G0450 Tripterygium wilfordii HOM05D000050 ORTHO05D006094 1.2e-08 63.2 100 46.0
DCAR_013516 Daucus carota HOM05D000050 ORTHO05D006094 1.5e-08 62.8 88 48.9
Lj1g0018365 Lotus japonicus HOM05D000050 ORTHO05D006094 2.0e-08 62.4 86 55.8
Sed0004724 Sechium edule HOM05D000050 ORTHO05D006094 2.6e-08 62.0 85 50.6
COL.COLO4_22768 Corchorus olitorius HOM05D000050 ORTHO05D006094 4.5e-08 61.2 86 53.5
Prupe.7G024400 Prunus persica HOM05D000050 ORTHO05D006094 4.5e-08 61.2 88 50.0
RcHm_v2.0_Chr3g0495201 Rosa chinensis HOM05D000050 ORTHO05D006094 7.7e-08 60.5 59 62.7
Ca_03424_v3 Cicer arietinum L. HOM05D000050 ORTHO05D006094 1.7e-07 59.3 83 50.6
Peaxi162Scf00153g01027 Petunia axillaris HOM05D000050 ORTHO05D006094 2.2e-07 58.9 75 56.0
AUR62020984 Chenopodium quinoa HOM05D000050 ORTHO05D006094 2.9e-07 58.5 100 46.0
MELO3C026341.2 Cucumis melo HOM05D000050 ORTHO05D006094 2.9e-07 58.5 82 52.4
TAR633G2380 Trochodendron aralioides HOM05D000050 ORTHO05D006094 2.9e-07 58.5 84 50.0
SalBow6G5391 Salvia bowleyana HOM05D000050 ORTHO05D006094 3.8e-07 58.2 80 53.8
SalBow6G5819 Salvia bowleyana HOM05D000050 ORTHO05D006094 3.8e-07 58.2 80 53.8
MSTRG.19762 Avicennia marina HOM05D000050 ORTHO05D006094 5.0e-07 57.8 88 52.3
HanXRQChr14g0448081 Helianthus annuus HOM05D000050 ORTHO05D006094 6.5e-07 57.4 84 53.6
GSVIVG01025833001 Vitis vinifera HOM05D000050 ORTHO05D006094 1.1e-06 56.6 72 52.8
Glyma.19G072800 Glycine max HOM05D000050 ORTHO05D006094 1.4e-06 56.2 82 52.4
Lalb_Chr22g0358131 Lupinus albus HOM05D000050 ORTHO05D006094 1.4e-06 56.2 97 45.4
Thhalv10014464m.g Eutrema salsugineum HOM05D000050 ORTHO05D006094 1.9e-06 55.8 86 50.0
Oeu009509.1 Olea europaea HOM05D000050 ORTHO05D006094 1.9e-06 55.8 83 49.4
SGA_v2.0_scaffold66G22321 Striga asiatica HOM05D000050 ORTHO05D006094 1.9e-06 55.8 89 47.2
MSTRG.6282 Avicennia marina HOM05D000050 ORTHO05D006094 2.5e-06 55.5 88 46.6
EL10Ac4g08712 Beta vulgaris HOM05D000050 ORTHO05D039035 4.2e-06 54.7 95 45.3
Lalb_Chr14g0365241 Lupinus albus HOM05D000050 ORTHO05D006094 4.2e-06 54.7 79 54.4
DCAR_020624 Daucus carota HOM05D000050 ORTHO05D006094 7.2e-06 53.9 90 47.8
Sp6g37750 Schrenkiella parvula HOM05D000050 ORTHO05D006094 7.2e-06 53.9 86 47.7


User provided reference genes

Program Settings