Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 3.3e-46 188.0 90 100.0
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.0e-40 168.7 88 86.4
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 4.6e-40 167.5 89 83.1
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.3e-39 166.0 90 83.3
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.7e-39 165.6 90 83.3
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.9e-39 164.5 89 82.0
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 3.9e-39 164.5 88 81.8
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.1e-38 162.9 88 80.7
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.1e-38 162.9 88 83.0
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 2.5e-38 161.8 90 78.9
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.2e-37 159.5 88 79.5
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 4.7e-37 157.5 90 78.9
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 8.0e-37 156.8 87 80.5
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 8.0e-37 156.8 87 80.5
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.1e-36 156.4 88 78.4
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.4e-36 156.0 88 81.8
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.4e-36 156.0 89 75.3
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 1.8e-36 155.6 88 77.3
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 4.0e-36 154.5 89 75.3
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 4.0e-36 154.5 88 75.0
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 5.2e-36 154.1 89 74.2
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 5.2e-36 154.1 90 77.8
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.8e-36 153.7 89 73.0
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 6.8e-36 153.7 89 73.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 8.9e-36 153.3 88 76.1
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.0e-35 152.1 89 71.9
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 2.6e-35 151.8 89 75.3
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 2.6e-35 151.8 88 75.0
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.4e-35 151.4 89 70.8
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 3.4e-35 151.4 88 73.9
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 4.4e-35 151.0 88 73.9
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.8e-35 150.6 89 73.0
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 7.5e-35 150.2 88 76.1
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 9.8e-35 149.8 89 69.7
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.3e-34 149.4 85 77.6
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 1.7e-34 149.1 88 75.0
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.7e-34 149.1 88 73.9
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.7e-34 149.1 88 73.9
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 2.2e-34 148.7 89 74.2
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.9e-34 148.3 88 71.6
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 6.4e-34 147.1 88 72.7
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.4e-33 146.0 85 72.9
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.4e-33 146.0 88 73.9
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.9e-33 145.6 88 73.9
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 4.1e-33 144.4 90 72.2
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 5.4e-33 144.1 87 73.6
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 5.4e-33 144.1 90 73.3
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 5.4e-33 144.1 85 72.9
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 7.0e-33 143.7 88 72.7
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 7.0e-33 143.7 88 72.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.1e-32 142.1 88 72.7
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.7e-32 141.7 87 73.6
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.7e-32 141.7 88 72.7
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.7e-32 141.7 88 72.7
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.6e-32 141.0 88 70.5
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.0e-31 139.8 90 71.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.0e-31 139.8 87 69.0
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.0e-31 139.8 89 68.5
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 68.2
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 70.5
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.7e-31 139.0 83 73.5
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 5.1e-31 137.5 87 70.1
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 5.1e-31 137.5 87 70.1
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 8.6e-31 136.7 88 69.3
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 8.6e-31 136.7 87 69.0
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.1e-30 136.3 88 71.6
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.1e-30 136.3 88 70.5
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.1e-30 136.3 88 68.2
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 65.5
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.9e-30 135.6 88 69.3
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.9e-30 135.6 88 69.3
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 2.5e-30 135.2 88 70.5
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 69.3
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 69.3
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 69.3
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 67.0
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 9.5e-30 133.3 87 67.8
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 64.8
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-29 132.5 88 68.2
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 3.6e-29 131.3 88 69.3
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 3.6e-29 131.3 90 66.7
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 4.7e-29 131.0 91 64.8
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 4.7e-29 131.0 91 64.8
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 68.2
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 68.2
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 68.2
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 68.2
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.2e-29 130.6 88 67.0
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.0e-28 127.9 92 67.4
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 5.2e-28 127.5 89 65.2
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 5.2e-28 127.5 87 64.4
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.5e-27 125.9 89 65.2
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 2.6e-27 125.2 88 63.6
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 2.6e-27 125.2 87 62.1
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 90 63.3
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 90 63.3
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 90 63.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 3.4e-27 124.8 87 64.4
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 4.4e-27 124.4 87 63.2
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 62.5
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 62.5
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 7.5e-27 123.6 88 61.4
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.3e-26 122.9 88 62.5
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 1.3e-26 122.9 88 62.5
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.7e-26 122.5 90 62.2
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.9e-26 121.7 90 61.1
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 3.7e-26 121.3 87 63.2
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 3.7e-26 121.3 88 61.4
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.9e-26 120.9 82 64.6
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.3e-26 120.2 90 61.1
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.3e-26 120.2 85 63.5
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 5.4e-25 117.5 90 57.8
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 6.6e-23 110.5 91 61.5
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.6e-21 105.9 63 71.4
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-21 105.9 59 79.7
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 2.0e-19 99.0 85 56.5
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 2.2e-18 95.5 88 50.0
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-17 92.8 75 56.0
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.4e-17 92.8 57 71.9
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.4e-17 90.9 57 68.4
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 7.8e-16 87.0 60 60.0
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 3.0e-15 85.1 76 56.6
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.5e-14 82.8 85 43.5
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 3.3e-14 81.6 59 55.9
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 2.8e-13 78.6 57 61.4
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 2.8e-13 78.6 57 61.4
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 5.8e-11 70.9 44 65.9
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 9.9e-11 70.1 45 64.4
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 6.4e-10 67.4 56 50.0
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.3e-09 63.5 76 43.4
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.3e-09 63.5 76 43.4
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-08 62.8 71 45.1
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-08 62.8 71 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.7e-08 62.0 70 40.0
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.0e-07 60.1 77 39.0
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 3.0e-07 58.5 81 34.6
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 6.6e-07 57.4 80 33.8
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.6e-07 57.4 82 30.5
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 3.3e-06 55.1 43 48.8
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 3.3e-06 55.1 43 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 7.3e-06 53.9 70 35.7


User provided reference genes

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