Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 4.2e-41 171.0 92 100.0
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-29 131.7 92 80.4
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 8.2e-29 130.2 92 79.3
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.3e-26 122.9 83 81.9
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.9e-25 119.0 83 79.5
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.2e-25 117.9 85 80.0
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.2e-25 117.1 83 78.3
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.6e-24 115.9 92 73.9
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 4.7e-24 114.4 92 72.8
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.4e-23 112.8 83 74.7
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 1.8e-23 112.5 92 71.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.0e-23 111.7 92 72.8
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 7.5e-22 107.1 94 69.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 7.5e-22 107.1 83 74.7
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.3e-21 106.3 83 71.1
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.3e-21 106.3 90 68.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.3e-21 106.3 83 69.9
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 2.8e-21 105.1 83 73.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 3.7e-21 104.8 93 68.8
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 3.7e-21 104.8 92 64.1
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 3.7e-21 104.8 92 64.1
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 4.8e-21 104.4 84 75.0
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 6.3e-21 104.0 92 70.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.4e-20 102.8 92 64.1
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.4e-20 102.8 84 71.4
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.8e-20 102.4 83 72.3
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 3.1e-20 101.7 83 71.1
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 5.4e-20 100.9 92 64.1
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 9.1e-20 100.1 83 71.1
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 9.1e-20 100.1 83 72.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.7e-19 98.6 93 61.3
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.5e-19 97.8 84 70.2
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 4.5e-19 97.8 78 71.8
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 5.9e-19 97.4 92 60.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 7.7e-19 97.1 83 67.5
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.0e-18 96.7 83 68.7
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.2e-18 95.5 83 67.5
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 2.9e-18 95.1 84 71.4
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.0e-18 94.4 92 64.1
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.5e-17 92.8 85 65.9
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.5e-17 92.8 84 66.7
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.5e-17 92.8 84 67.9
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.2e-17 91.7 90 62.2
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.2e-17 91.3 84 65.5
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 4.2e-17 91.3 83 65.1
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 5.5e-17 90.9 109 55.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 7.2e-17 90.5 83 65.1
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 7.2e-17 90.5 83 65.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 7.2e-17 90.5 83 63.9
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 9.5e-17 90.1 83 66.3
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 9.5e-17 90.1 84 65.5
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 9.5e-17 90.1 83 65.1
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.6e-16 89.4 95 58.9
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.6e-16 89.4 83 65.1
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.8e-16 88.6 84 65.5
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 6.1e-16 87.4 78 67.9
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 6.1e-16 87.4 84 67.9
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 6.1e-16 87.4 83 65.1
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.4e-15 86.3 83 59.0
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.4e-15 86.3 83 60.2
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.8e-15 85.9 83 57.8
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.3e-15 85.5 85 61.2
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.3e-15 85.5 83 59.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.0e-15 85.1 83 59.0
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 5.2e-15 84.3 83 59.0
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 5.2e-15 84.3 83 59.0
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 6.8e-15 84.0 83 59.0
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 6.8e-15 84.0 83 59.0
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 6.8e-15 84.0 83 65.1
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 8.8e-15 83.6 85 61.2
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.6e-14 82.0 86 60.5
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.4e-14 81.6 88 59.1
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.4e-14 81.6 78 65.4
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 5.7e-14 80.9 84 59.5
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 60.2
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.2e-13 79.0 83 59.0
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.8e-13 78.6 109 50.5
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 4.9e-13 77.8 83 57.8
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.4e-12 76.3 83 56.6
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.8e-12 75.9 83 57.8
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 9.2e-12 73.6 83 57.8
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 9.2e-12 73.6 65 64.6
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.2e-11 73.2 52 73.1
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.2e-11 73.2 52 73.1
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.6e-11 72.8 84 57.1
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.0e-11 72.4 52 71.2
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 4.5e-11 71.2 75 56.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 5.9e-11 70.9 90 54.4
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.9e-11 70.9 90 50.0
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 5.9e-11 70.9 84 52.4
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.3e-10 69.7 83 55.4
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.3e-10 69.7 91 52.7
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 5.0e-10 67.8 40 87.5
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 6.6e-10 67.4 40 82.5
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.1e-09 66.6 81 49.4
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 5.6e-09 64.3 98 50.0
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 7.3e-09 63.9 84 54.8
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 7.3e-09 63.9 91 51.6
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 7.3e-09 63.9 90 52.2
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 9.5e-09 63.5 75 53.3
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.2e-08 63.2 66 62.1
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 3.6e-08 61.6 103 47.6
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 4.7e-08 61.2 40 80.0
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 6.1e-08 60.8 85 49.4
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 8.0e-08 60.5 52 65.4
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 1.4e-07 59.7 87 49.4
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 1.4e-07 59.7 71 54.9
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.4e-07 59.7 84 48.8
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.8e-07 59.3 86 47.7
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.3e-07 58.9 55 56.4
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 2.3e-07 58.9 55 56.4
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 2.3e-07 58.9 80 46.2
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 4.0e-07 58.2 54 57.4
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 54 57.4
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 4.0e-07 58.2 54 57.4
COL.COLO4_20976 Corchorus olitorius HOM05D007429 ORTHO05D003505 4.0e-07 58.2 44 68.2
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 4.0e-07 58.2 120 39.2
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 5.2e-07 57.8 73 52.1
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 6.8e-07 57.4 77 49.4
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 8.9e-07 57.0 67 52.2
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.9e-07 57.0 70 50.0
HPP92_014491 Vanilla planifolia HOM05D006762 ORTHO05D003505 8.9e-07 57.0 52 63.5
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 8.9e-07 57.0 63 54.0
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.2e-06 56.6 69 50.7
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.2e-06 56.6 54 57.4
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.5e-06 56.2 85 42.4
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.5e-06 56.2 92 45.7
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-06 55.8 88 44.3
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.0e-06 55.8 59 55.9
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.0e-06 55.8 72 51.4
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.0e-06 55.8 72 51.4
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.0e-06 55.8 72 51.4
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.6e-06 55.5 84 42.9
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.6e-06 55.5 84 42.9
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 2.6e-06 55.5 82 46.3
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.6e-06 55.5 63 54.0
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 3.4e-06 55.1 98 42.9
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 3.4e-06 55.1 92 43.5
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.4e-06 55.1 73 49.3
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.4e-06 55.1 85 45.9
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 3.4e-06 55.1 94 47.9
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.4e-06 55.1 44 68.2
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 3.4e-06 55.1 88 44.3
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-06 55.1 87 42.5
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.4e-06 55.1 88 45.5
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.4e-06 54.7 92 47.8
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 4.4e-06 54.7 83 43.4
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.4e-06 54.7 85 45.9
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 4.4e-06 54.7 66 53.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 7.5e-06 53.9 90 43.3
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 7.5e-06 53.9 49 61.2
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 7.5e-06 53.9 88 43.2
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 7.5e-06 53.9 88 43.2
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 7.5e-06 53.9 88 43.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 7.5e-06 53.9 83 43.4
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 7.5e-06 53.9 66 51.5
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 7.5e-06 53.9 85 45.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 7.5e-06 53.9 123 40.7
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 9.8e-06 53.5 98 41.8
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 9.8e-06 53.5 85 43.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 9.8e-06 53.5 88 43.2


User provided reference genes

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