Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.3e-75 285.4 136 100.0
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.9e-46 188.7 102 88.2
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 2.1e-36 156.0 102 71.6
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 2.7e-36 155.6 102 71.6
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 2.7e-36 155.6 102 74.5
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 6.0e-36 154.5 102 75.5
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 7.9e-36 154.1 102 71.6
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 7.9e-36 154.1 102 71.6
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 6.7e-35 151.0 102 70.6
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 6.7e-35 151.0 102 72.5
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 8.7e-35 150.6 102 72.5
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 8.7e-35 150.6 102 70.6
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.1e-34 150.2 102 71.6
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.1e-34 150.2 102 71.6
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.5e-34 149.8 102 72.5
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 2.5e-34 149.1 102 64.7
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 3.3e-34 148.7 102 71.6
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 5.6e-34 147.9 102 69.6
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 5.6e-34 147.9 102 71.6
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 9.6e-34 147.1 102 68.6
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 1.3e-33 146.7 102 70.6
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.6e-33 146.4 102 72.5
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.6e-33 146.4 102 68.6
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.6e-33 146.4 102 68.6
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.6e-33 146.4 102 67.6
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 2.1e-33 146.0 102 64.7
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 2.1e-33 146.0 102 63.7
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 4.8e-33 144.8 102 70.6
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 4.8e-33 144.8 102 69.6
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 4.8e-33 144.8 102 67.6
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 6.2e-33 144.4 102 66.7
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 8.2e-33 144.1 102 68.6
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.1e-32 143.7 102 71.6
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.1e-32 143.7 102 69.6
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 1.1e-32 143.7 102 71.6
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.1e-32 143.7 102 63.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.1e-32 143.7 102 69.6
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 1.4e-32 143.3 102 68.6
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.4e-32 143.3 102 68.6
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 1.8e-32 142.9 102 68.6
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.8e-32 142.9 102 68.6
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 2.4e-32 142.5 102 67.6
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 2.4e-32 142.5 102 68.6
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 3.1e-32 142.1 102 67.6
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 3.1e-32 142.1 102 69.6
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 3.1e-32 142.1 102 67.6
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 4.0e-32 141.7 104 68.3
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.3e-32 141.4 104 68.3
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 6.9e-32 141.0 102 67.6
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 1.2e-31 140.2 102 68.6
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 1.2e-31 140.2 102 67.6
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 2.0e-31 139.4 102 69.6
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 2.6e-31 139.0 102 67.6
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.6e-31 139.0 102 67.6
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 2.6e-31 139.0 102 66.7
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 3.4e-31 138.7 102 67.6
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 3.4e-31 138.7 102 67.6
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 3.4e-31 138.7 102 67.6
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 3.4e-31 138.7 102 67.6
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 4.5e-31 138.3 102 66.7
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 5.8e-31 137.9 102 65.7
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 5.8e-31 137.9 102 67.6
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.0e-30 137.1 102 66.7
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.3e-30 136.7 103 67.0
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 1.7e-30 136.3 102 66.7
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 2.2e-30 136.0 103 67.0
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 2.2e-30 136.0 102 66.7
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 2.9e-30 135.6 102 65.7
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 3.8e-30 135.2 102 63.7
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.5e-30 134.4 102 62.7
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 8.4e-30 134.0 101 65.3
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.1e-29 133.7 103 64.1
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.4e-29 133.3 103 64.1
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.4e-29 133.3 102 62.7
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.4e-29 133.3 112 61.6
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.9e-29 132.9 102 64.7
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 3.2e-29 132.1 102 63.7
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.2e-29 131.7 102 61.8
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 4.2e-29 131.7 102 68.6
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 7.1e-29 131.0 102 63.7
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 7.1e-29 131.0 102 62.7
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 7.1e-29 131.0 102 62.7
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 9.3e-29 130.6 102 64.7
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.6e-28 129.8 102 61.8
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.7e-28 129.0 102 62.7
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 3.5e-28 128.6 105 62.9
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 7.9e-28 127.5 102 61.8
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 1.0e-27 127.1 106 63.2
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 2.3e-27 125.9 102 60.8
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 3.0e-27 125.6 102 59.8
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.5e-26 123.2 106 59.4
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.9e-26 122.9 120 55.0
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 2.2e-25 119.4 106 59.4
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 2.8e-25 119.0 106 56.6
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 4.8e-25 118.2 106 56.6
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 8.2e-25 117.5 104 58.7
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 8.2e-25 117.5 104 58.7
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 1.4e-24 116.7 103 59.2
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 3.1e-24 115.5 105 57.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 3.1e-24 115.5 105 57.1
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 4.1e-24 115.2 105 57.1
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 4.1e-24 115.2 105 57.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 4.1e-24 115.2 105 57.1
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 5.3e-24 114.8 155 45.2
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 6.9e-24 114.4 108 56.5
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 2.9e-22 109.0 89 59.6
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 3.3e-18 95.5 70 70.0
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 9.1e-16 87.4 109 46.8
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.1e-13 80.5 53 73.6
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 1.2e-12 77.0 53 71.7
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.6e-12 76.6 109 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 3.6e-12 75.5 102 40.2
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.4e-11 73.6 58 63.8
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-11 72.4 59 66.1
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 2.0e-10 69.7 103 35.9
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 5.7e-10 68.2 103 35.9
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 2.2e-09 66.2 111 32.4
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.8e-08 63.2 44 61.4
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 2.2e-06 56.2 65 50.8


User provided reference genes

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