Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 2.7e-76 288.5 139 100.0
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 9.4e-61 236.9 127 89.0
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 1.2e-60 236.5 142 83.1
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 3.6e-60 235.0 139 80.6
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 6.1e-60 234.2 141 82.3
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 4.0e-59 231.5 143 80.4
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 6.8e-59 230.7 128 86.7
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 1.2e-58 229.9 139 80.6
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 1.2e-58 229.9 129 83.7
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 1.5e-58 229.6 139 81.3
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 1.5e-58 229.6 143 79.7
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 9.8e-58 226.9 136 80.9
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 9.8e-58 226.9 139 79.1
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 9.8e-58 226.9 139 80.6
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 1.3e-57 226.5 139 79.9
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 2.2e-57 225.7 121 88.4
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 2.2e-57 225.7 144 77.1
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 2.8e-57 225.3 132 81.8
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 3.7e-57 224.9 139 79.1
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 3.7e-57 224.9 139 79.1
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 6.3e-57 224.2 139 79.9
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 8.3e-57 223.8 132 81.8
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 8.3e-57 223.8 139 78.4
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 1.8e-56 222.6 118 87.3
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 1.8e-56 222.6 132 80.3
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 2.4e-56 222.2 121 85.1
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.4e-56 222.2 120 86.7
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 3.1e-56 221.9 139 77.0
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 4.1e-56 221.5 139 77.0
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 5.4e-56 221.1 139 79.9
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 7.0e-56 220.7 143 74.8
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 7.0e-56 220.7 143 74.8
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 1.2e-55 219.9 143 75.5
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 2.0e-55 219.2 135 79.3
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 2.0e-55 219.2 135 79.3
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 2.7e-55 218.8 118 88.1
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 2.7e-55 218.8 132 78.8
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 2.7e-55 218.8 139 79.1
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 3.5e-55 218.4 132 79.5
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 3.5e-55 218.4 128 80.5
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 3.5e-55 218.4 127 83.5
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 4.5e-55 218.0 139 76.3
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 5.9e-55 217.6 142 76.1
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 5.9e-55 217.6 124 82.3
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 5.9e-55 217.6 144 74.3
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 7.7e-55 217.2 123 82.1
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 7.7e-55 217.2 118 86.4
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 7.7e-55 217.2 119 83.2
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 1.3e-54 216.5 140 75.0
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 1.7e-54 216.1 142 75.4
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 1.7e-54 216.1 127 79.5
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 1.7e-54 216.1 118 85.6
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 1.7e-54 216.1 142 76.8
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 2.3e-54 215.7 133 77.4
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 2.3e-54 215.7 139 75.5
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 2.3e-54 215.7 138 76.1
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 3.8e-54 214.9 143 74.8
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 3.8e-54 214.9 140 76.4
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 3.8e-54 214.9 144 75.0
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 5.0e-54 214.5 130 78.5
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 5.0e-54 214.5 135 77.0
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 5.0e-54 214.5 132 78.0
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 6.6e-54 214.2 140 74.3
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 6.6e-54 214.2 134 77.6
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 8.6e-54 213.8 124 80.6
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 8.6e-54 213.8 117 82.9
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 8.6e-54 213.8 127 78.7
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 1.1e-53 213.4 133 77.4
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 1.1e-53 213.4 135 76.3
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 1.5e-53 213.0 131 80.2
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 1.9e-53 212.6 134 75.4
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 1.9e-53 212.6 120 85.0
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 2.5e-53 212.2 144 72.9
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 2.5e-53 212.2 121 83.5
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 2.5e-53 212.2 120 84.2
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 2.5e-53 212.2 134 75.4
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 3.3e-53 211.8 139 71.9
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 4.3e-53 211.5 127 78.7
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 5.6e-53 211.1 119 80.7
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 9.5e-53 210.3 118 83.9
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 9.5e-53 210.3 121 81.8
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 1.2e-52 209.9 117 84.6
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 1.2e-52 209.9 139 74.8
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 2.8e-52 208.8 123 79.7
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 2.8e-52 208.8 137 73.7
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 6.1e-52 207.6 142 73.9
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 6.1e-52 207.6 140 74.3
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 1.4e-51 206.5 151 69.5
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 2.6e-50 202.2 118 81.4
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 8.3e-49 197.2 125 71.2
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 4.1e-48 194.9 144 66.0
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 3.5e-47 191.8 118 72.9
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 4.6e-47 191.4 113 77.9
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 3.9e-46 188.3 120 71.7
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 6.6e-46 187.6 136 69.1
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 8.6e-46 187.2 153 62.7
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 2.5e-45 185.7 136 68.4
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 8.0e-44 180.6 122 65.6
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 3.1e-43 178.7 144 63.2
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 3.1e-43 178.7 120 67.5
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 1.7e-41 172.9 149 65.8
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 8.3e-41 170.6 99 77.8
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 1.9e-40 169.5 127 62.2
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 1.1e-35 153.7 119 61.3
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 1.4e-35 153.3 116 60.3
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 1.4e-35 153.3 147 49.7
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 5.2e-35 151.4 142 52.8
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 5.2e-27 124.8 67 85.1
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.5e-26 123.2 67 83.6
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 2.4e-24 115.9 69 73.9
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 2.7e-23 112.5 75 73.3
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 1.3e-22 110.2 69 75.4
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 6.6e-22 107.8 120 50.0
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 7.3e-21 104.4 116 47.4
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 4.4e-18 95.1 62 69.4
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 4.0e-11 72.0 48 72.9
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 5.4e-08 61.6 60 51.7


User provided reference genes

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