Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 1.1e-78 296.6 150 100.0
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 1.3e-52 209.9 148 71.6
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 4.0e-49 198.4 149 71.8
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 6.9e-49 197.6 125 76.0
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 1.5e-48 196.4 125 76.8
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 2.6e-48 195.7 132 75.0
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 3.4e-48 195.3 125 76.8
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 3.4e-48 195.3 129 73.6
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 4.4e-48 194.9 129 72.9
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 5.8e-48 194.5 126 78.6
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 5.8e-48 194.5 131 73.3
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 9.9e-48 193.7 145 70.3
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 1.7e-47 193.0 129 70.5
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 3.8e-47 191.8 135 72.6
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 1.1e-46 190.3 148 67.6
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 1.9e-46 189.5 136 71.3
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.4e-46 189.1 136 70.6
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 3.2e-46 188.7 144 66.7
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 4.2e-46 188.3 131 71.0
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 5.4e-46 188.0 140 69.3
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 9.3e-46 187.2 125 73.6
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 1.6e-45 186.4 147 63.9
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 2.1e-45 186.0 147 64.6
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 2.7e-45 185.7 104 84.6
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 3.5e-45 185.3 127 72.4
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 4.6e-45 184.9 127 71.7
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 4.6e-45 184.9 125 70.4
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 1.0e-44 183.7 127 70.1
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 1.3e-44 183.3 118 73.7
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 3.9e-44 181.8 149 63.8
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 5.1e-44 181.4 125 70.4
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 6.6e-44 181.0 125 73.6
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 6.6e-44 181.0 151 64.9
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 6.6e-44 181.0 118 73.7
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 8.7e-44 180.6 127 70.9
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 1.1e-43 180.3 146 66.4
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.9e-43 179.5 127 70.1
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 3.3e-43 178.7 143 65.0
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 4.3e-43 178.3 142 66.9
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 5.6e-43 177.9 127 69.3
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 5.6e-43 177.9 134 65.7
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 5.6e-43 177.9 102 81.4
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 7.3e-43 177.6 130 68.5
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 7.3e-43 177.6 102 80.4
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 7.3e-43 177.6 102 80.4
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 7.3e-43 177.6 100 83.0
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 7.3e-43 177.6 135 69.6
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 9.6e-43 177.2 136 61.8
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.6e-42 176.4 127 67.7
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 1.6e-42 176.4 118 71.2
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 2.8e-42 175.6 149 63.8
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 2.8e-42 175.6 135 64.4
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 2.8e-42 175.6 134 64.2
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 2.8e-42 175.6 135 63.0
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.8e-42 175.6 155 60.0
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 4.8e-42 174.9 135 63.7
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 4.8e-42 174.9 137 64.2
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 4.8e-42 174.9 138 64.5
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.8e-42 174.9 117 70.9
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 4.8e-42 174.9 132 65.9
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 6.2e-42 174.5 137 65.0
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 6.2e-42 174.5 132 66.7
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 8.1e-42 174.1 137 64.2
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 1.1e-41 173.7 134 63.4
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.1e-41 173.7 134 63.4
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 1.1e-41 173.7 134 63.4
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 1.1e-41 173.7 134 63.4
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 1.4e-41 173.3 147 61.9
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.4e-41 173.3 135 63.7
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 1.8e-41 172.9 134 63.4
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 4.0e-41 171.8 117 71.8
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 4.0e-41 171.8 147 61.2
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 5.3e-41 171.4 107 77.6
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 5.3e-41 171.4 107 77.6
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 6.9e-41 171.0 133 68.4
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 9.0e-41 170.6 134 62.7
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 2.0e-40 169.5 146 59.6
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.0e-40 169.5 147 60.5
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 2.6e-40 169.1 130 66.2
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.4e-40 168.7 154 57.1
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 9.9e-40 167.2 154 56.5
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 2.2e-39 166.0 124 66.9
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 4.9e-39 164.9 102 73.5
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 6.4e-39 164.5 122 64.8
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 8.4e-39 164.1 118 67.8
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 1.1e-38 163.7 102 73.5
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.4e-38 163.3 122 63.1
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 3.2e-38 162.2 138 62.3
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 4.2e-38 161.8 104 74.0
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 5.4e-38 161.4 104 73.1
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 7.1e-38 161.0 144 61.1
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 7.1e-38 161.0 150 58.7
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 1.2e-37 160.2 135 60.7
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 1.2e-37 160.2 147 58.5
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 1.2e-37 160.2 143 56.6
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 1.6e-37 159.8 137 61.3
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 2.1e-37 159.5 97 74.2
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.5e-37 158.7 204 46.6
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 4.6e-37 158.3 104 71.2
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 1.0e-36 157.1 102 73.5
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 3.0e-36 155.6 148 55.4
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 8.7e-36 154.1 170 51.2
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 1.9e-35 152.9 151 54.3
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 2.5e-35 152.5 143 58.0
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 3.3e-35 152.1 147 55.8
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 1.6e-34 149.8 113 65.5
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 2.1e-34 149.4 87 81.6
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 4.8e-34 148.3 113 67.3
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.4e-33 146.7 84 82.1
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 1.2e-32 143.7 141 56.7
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 1.5e-32 143.3 129 62.0
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 9.9e-32 140.6 143 54.5
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 6.4e-31 137.9 131 52.7
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 3.2e-30 135.6 106 62.3
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.2e-29 133.7 155 50.3
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 1.5e-27 126.7 103 57.3
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 2.8e-26 122.5 107 54.2
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 6.2e-26 121.3 78 69.2
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 5.3e-25 118.2 61 90.2
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 1.7e-23 113.2 98 54.1
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 6.5e-23 111.3 99 55.6
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 8.4e-23 110.9 100 50.0
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.7e-21 105.9 61 80.3
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.9e-19 99.8 61 77.0
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 2.5e-19 99.4 61 72.1
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.0e-15 87.4 66 59.1
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 2.9e-15 85.9 88 54.5
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 3.2e-14 82.4 57 66.7
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 4.6e-13 78.6 65 63.1
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.5e-11 73.6 49 67.3
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 3.3e-11 72.4 92 50.0
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 2.8e-10 69.3 101 31.7
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 4.8e-10 68.6 61 50.8
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 6.3e-10 68.2 95 45.3
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.8e-09 66.6 84 47.6
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 2.6e-08 62.8 40 72.5
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 7.7e-08 61.2 114 31.6


User provided reference genes

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