Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009752m.g Citrus clementina HOM05D007179 ORTHO05D009124 2.9e-85 318.5 161 100.0
Gohir.A05G006600 Gossypium hirsutum HOM05D007179 ORTHO05D009124 9.0e-39 164.1 135 65.2
Gohir.D05G007500 Gossypium hirsutum HOM05D007179 ORTHO05D009124 7.6e-38 161.0 135 63.7
CiPaw.07G187200 Carya illinoinensis HOM05D007179 ORTHO05D009124 1.0e-37 160.6 118 68.6
Gorai.009G007600 Gossypium raimondii HOM05D007179 ORTHO05D009124 3.8e-37 158.7 135 63.0
TWI63G0613 Tripterygium wilfordii HOM05D007179 ORTHO05D009124 1.4e-36 156.8 123 65.0
Rhsim01G0010000 Rhododendron simsii HOM05D007179 ORTHO05D009124 3.2e-36 155.6 116 69.0
Cpa.g.c29666.1 Carica papaya HOM05D007179 ORTHO05D009124 9.3e-36 154.1 114 66.7
CiPaw.08G039500 Carya illinoinensis HOM05D007179 ORTHO05D009124 4.6e-35 151.8 130 65.4
Medtr4g129320 Medicago truncatula HOM05D007179 ORTHO05D009124 4.6e-35 151.8 117 65.8
Potri.006G175600 Populus trichocarpa HOM05D007179 ORTHO05D009124 6.0e-35 151.4 135 60.0
CANSAT11G0330 Cannabis sativa HOM05D007179 ORTHO05D009124 7.9e-35 151.0 117 65.8
Dinv41297 Davidia involucrata HOM05D007179 ORTHO05D009124 1.3e-34 150.2 136 61.8
Prupe.1G095600 Prunus persica HOM05D007179 ORTHO05D009124 1.8e-34 149.8 107 68.2
Psat0s236g0160 Pisum sativum HOM05D007179 ORTHO05D009124 2.3e-34 149.4 117 63.2
Sabra06G0134300 Salix brachista HOM05D007179 ORTHO05D009124 3.0e-34 149.1 133 60.2
Sed0008122 Sechium edule HOM05D007179 ORTHO05D009124 6.7e-34 147.9 118 62.7
Actinidia24032 Actinidia chinensis HOM05D007179 ORTHO05D009124 1.5e-33 146.7 119 62.2
Manes.06G029800 Manihot esculenta HOM05D007179 ORTHO05D009124 1.9e-33 146.4 116 69.0
CSS0047035 Camellia sinensis var. sinensis HOM05D007179 ORTHO05D009124 7.4e-33 144.4 142 56.3
MD16G1263600 Malus domestica HOM05D007179 ORTHO05D009124 7.4e-33 144.4 134 56.7
SalBow1G0390 Salvia bowleyana HOM05D007179 ORTHO05D009124 7.4e-33 144.4 137 56.9
Atru.chr7.533 Acer truncatum HOM05D007179 ORTHO05D009124 1.3e-32 143.7 114 65.8
Thecc.09G162500 Theobroma cacao HOM05D007179 ORTHO05D009124 1.6e-32 143.3 130 60.0
arahy.Tifrunner.gnm1.ann1.8TJD28 Arachis hypogaea HOM05D007179 ORTHO05D009124 2.8e-32 142.5 111 63.1
Nn1g04316 Nelumbo nucifera HOM05D007179 ORTHO05D009124 3.7e-32 142.1 115 65.2
THA.LOC104817810 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 3.7e-32 142.1 133 57.9
arahy.Tifrunner.gnm1.ann1.7FN6WP Arachis hypogaea HOM05D007179 ORTHO05D009124 4.8e-32 141.7 111 62.2
MELO3C004033.2 Cucumis melo HOM05D007179 ORTHO05D009124 8.2e-32 141.0 132 59.1
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.1e-31 140.6 139 56.8
Oeu058831.1 Olea europaea HOM05D007179 ORTHO05D009124 1.4e-31 140.2 108 64.8
TAR626G0641 Trochodendron aralioides HOM05D007179 ORTHO05D009124 1.8e-31 139.8 127 63.0
FvH4_4g08570 Fragaria vesca HOM05D007179 ORTHO05D009124 3.1e-31 139.0 136 59.6
MSTRG.26242 Avicennia marina HOM05D007179 ORTHO05D009124 4.1e-31 138.7 107 66.4
Glyma.17G067900 Glycine max HOM05D007179 ORTHO05D009124 4.1e-31 138.7 123 57.7
Sc14g0001110 Simmondsia chinensis HOM05D007179 ORTHO05D009124 1.2e-30 137.1 106 64.2
CsaV3_2G008330 Cucumis sativus L. HOM05D007179 ORTHO05D009124 2.0e-30 136.3 129 59.7
Lj9A729T43 Lonicera japonica HOM05D007179 ORTHO05D009124 2.0e-30 136.3 120 60.0
Lalb_Chr13g0300481 Lupinus albus HOM05D007179 ORTHO05D009124 2.0e-30 136.3 110 64.5
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 5.9e-30 134.8 97 69.1
Lj4g0019685 Lotus japonicus HOM05D007179 ORTHO05D009124 7.6e-30 134.4 120 59.2
PGR102G1777 Punica granatum HOM05D007179 ORTHO05D009124 2.2e-29 132.9 90 75.6
RcHm_v2.0_Chr4g0404651 Rosa chinensis HOM05D007179 ORTHO05D009124 2.2e-29 132.9 115 60.0
PGSC0003DMG400027448 Solanum tuberosum HOM05D007179 ORTHO05D009124 2.2e-29 132.9 138 52.2
GSVIVG01032307001 Vitis vinifera HOM05D007179 ORTHO05D009124 3.8e-29 132.1 114 61.4
ClCG11G012230 Citrullus lanatus HOM05D007179 ORTHO05D009124 5.0e-29 131.7 124 57.3
DCAR_017946 Daucus carota HOM05D007179 ORTHO05D009124 5.0e-29 131.7 105 64.8
ECA236G0374 Erigeron canadensis HOM05D007179 ORTHO05D009124 1.4e-28 130.2 107 59.8
Eucgr.C02437 Eucalyptus grandis HOM05D007179 ORTHO05D009124 1.9e-28 129.8 151 51.7
THA.LOC104811817 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 1.9e-28 129.8 119 58.0
VMungo1215G3157 Vigna mungo HOM05D007179 ORTHO05D009124 2.5e-28 129.4 131 54.2
Lsat_1_v5_gn_8_65641 Lactuca sativa HOM05D007179 ORTHO05D009124 7.2e-28 127.9 107 59.8
CAN.G584.44 Capsicum annuum HOM05D007179 ORTHO05D009124 9.3e-28 127.5 111 60.4
Solyc07g006490.3 Solanum lycopersicum HOM05D007179 ORTHO05D009124 3.6e-27 125.6 138 50.0
Peaxi162Scf00457g00318 Petunia axillaris HOM05D007179 ORTHO05D009124 6.1e-27 124.8 135 53.3
Migut.K00269 Erythranthe guttata HOM05D007179 ORTHO05D009124 1.0e-26 124.0 129 53.5
Sopen07g002570 Solanum pennellii HOM05D007179 ORTHO05D009124 1.8e-26 123.2 138 48.6
Cc06_g13840 Coffea canephora HOM05D007179 ORTHO05D009124 2.3e-26 122.9 121 57.0
AL7G24590 Arabidopsis lyrata HOM05D007179 ORTHO05D009124 3.0e-26 122.5 128 53.1
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 6.7e-26 121.3 138 50.7
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 8.8e-26 120.9 138 50.0
CARHR235720 Cardamine hirsuta HOM05D007179 ORTHO05D009124 8.8e-26 120.9 132 51.5
Carub.0007s1277 Capsella rubella HOM05D007179 ORTHO05D009124 1.5e-25 120.2 143 52.4
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 1.9e-25 119.8 118 55.1
C01p24450 Brassica napus HOM05D007179 ORTHO05D009124 1.9e-25 119.8 151 48.3
Aa31LG3G160 Aethionema arabicum HOM05D007179 ORTHO05D009124 2.5e-25 119.4 131 52.7
MBI15_g26085_MAGBIO Magnolia biondii HOM05D007179 ORTHO05D009124 5.7e-25 118.2 93 65.6
AT4G28025 Arabidopsis thaliana HOM05D007179 ORTHO05D009124 7.4e-25 117.9 144 50.7
Nitab4.5_0011540g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 7.4e-25 117.9 92 65.2
BolC1t02394H Brassica oleracea HOM05D007179 ORTHO05D009124 1.7e-24 116.7 122 54.1
Thhalv10026434m.g Eutrema salsugineum HOM05D007179 ORTHO05D009124 1.7e-24 116.7 132 52.3
Hund08993 Selenicereus undatus HOM05D007179 ORTHO05D009124 2.2e-24 116.3 100 61.0
C07p55870 Brassica napus HOM05D007179 ORTHO05D009124 3.7e-24 115.5 119 56.3
Phvul.003G150500 Phaseolus vulgaris HOM05D007179 ORTHO05D009124 8.2e-24 114.4 142 48.6
Hund26395 Selenicereus undatus HOM05D007179 ORTHO05D009124 1.4e-23 113.6 107 57.9
Sp7g25970 Schrenkiella parvula HOM05D007179 ORTHO05D009124 1.8e-23 113.2 107 56.1
A03p57660 Brassica napus HOM05D007179 ORTHO05D009124 3.1e-23 112.5 98 61.2
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 3.1e-23 112.5 118 55.1
BraA03t14832Z Brassica rapa HOM05D007179 ORTHO05D009124 4.1e-23 112.1 98 60.2
HanXRQChr05g0136491 Helianthus annuus HOM05D007179 ORTHO05D009124 6.9e-23 111.3 107 56.1
PSO063G6628 Papaver somniferum HOM05D007179 ORTHO05D009124 6.9e-23 111.3 150 46.7
BcaC06g32651 Brassica carinata HOM05D007179 ORTHO05D009124 2.0e-22 109.8 126 52.4
Aqoxy7G03201 Aquilegia oxysepala HOM05D007179 ORTHO05D009124 3.4e-22 109.0 115 51.3
vmacro13080 Vaccinium macrocarpon HOM05D007179 ORTHO05D009124 5.9e-22 108.2 82 68.3
PSO782G3484 Papaver somniferum HOM05D007179 ORTHO05D009124 7.7e-22 107.8 143 49.0
Actinidia24777 Actinidia chinensis HOM05D007179 ORTHO05D009124 1.7e-21 106.7 75 70.7
AUR62039974 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.7e-21 106.7 87 65.5
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 6.5e-21 104.8 76 71.1
unitig_37.g12688 Utricularia gibba HOM05D007179 ORTHO05D009124 1.1e-20 104.0 97 54.6
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.4e-20 103.6 86 64.0
FAN22G0121 Fragaria x ananassa HOM05D007179 ORTHO05D009124 2.5e-20 102.8 72 73.6
ATR0580G253 Amborella trichopoda HOM05D007179 ORTHO05D009124 2.1e-19 99.8 111 53.2
CDE05G2983 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 2.7e-19 99.4 105 53.3
Haze_22156 Corylus avellana HOM05D007179 ORTHO05D009124 6.1e-19 98.2 97 53.6
HPP92_018535 Vanilla planifolia HOM05D007179 ORTHO05D009124 1.0e-18 97.4 101 55.4
FAN17G2417 Fragaria x ananassa HOM05D007179 ORTHO05D009124 1.8e-18 96.7 67 76.1
CDE02G2992 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 6.7e-18 94.7 101 51.5
EL10Ac8g18859 Beta vulgaris HOM05D007179 ORTHO05D009124 1.1e-17 94.0 76 61.8
Nitab4.5_0002004g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 4.4e-17 92.0 67 70.1
Zm00001eb246810 Zea mays HOM05D007179 ORTHO05D009124 9.7e-17 90.9 71 66.2
Medtr4g129300 Medicago truncatula HOM05D007179 ORTHO05D009124 2.8e-16 89.4 74 64.9
SGA_v2.0_scaffold325G48698 Striga asiatica HOM05D007179 ORTHO05D009124 3.4e-14 82.4 65 63.1
SMO358G0032 Selaginella moellendorffii HOM05D007179 ORTHO05D009124 4.5e-14 82.0 77 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2423 Anthoceros agrestis HOM05D007179 ORTHO05D009124 1.7e-13 80.1 74 56.8
Mapoly0124s0027 Marchantia polymorpha HOM05D007179 ORTHO05D009124 1.7e-13 80.1 127 39.4
Pp3c12_25950 Physcomitrium patens HOM05D007179 ORTHO05D009124 8.5e-13 77.8 71 50.7
Dinv42771 Davidia involucrata HOM05D007179 ORTHO05D009124 1.4e-12 77.0 99 48.5
BcaC09g50519 Brassica carinata HOM05D000147 ORTHO05D013131 1.5e-09 67.0 65 53.8
Haze_22155 Corylus avellana HOM05D007179 ORTHO05D009124 3.1e-07 59.3 42 66.7


User provided reference genes

Program Settings