Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009750m.g Citrus clementina HOM05D006970 ORTHO05D008332 7.3e-81 303.9 162 100.0
Ciclev10009783m.g Citrus clementina HOM05D006970 ORTHO05D008332 6.1e-43 177.9 156 65.4
Ciclev10009598m.g Citrus clementina HOM05D006970 ORTHO05D008332 1.2e-38 163.7 185 54.1
Atru.chr7.798 Acer truncatum HOM05D006970 ORTHO05D008332 6.3e-32 141.4 163 51.5
Ciclev10010480m.g Citrus clementina HOM05D006970 ORTHO05D008332 5.3e-31 138.3 168 53.6
QL02p047741 Quercus lobata HOM05D006970 ORTHO05D008332 1.3e-24 117.1 165 44.2
Haze_22006 Corylus avellana HOM05D006970 ORTHO05D008332 8.2e-24 114.4 156 46.2
Gohir.D13G213400 Gossypium hirsutum HOM05D006970 ORTHO05D008332 2.4e-23 112.8 173 42.8
Gorai.013G243700 Gossypium raimondii HOM05D006970 ORTHO05D008332 2.4e-23 112.8 173 42.8
Cfa013439 Carpinus fangiana HOM05D006970 ORTHO05D008332 4.1e-23 112.1 158 45.6
Ciclev10027216m.g Citrus clementina HOM05D006970 ORTHO05D008332 5.3e-23 111.7 138 51.4
Gorai.009G002800 Gossypium raimondii HOM05D006970 ORTHO05D008332 1.2e-22 110.5 151 47.0
Cc06_g21770 Coffea canephora HOM05D006970 ORTHO05D008332 2.0e-22 109.8 178 41.6
Gohir.A13G209000 Gossypium hirsutum HOM05D006970 ORTHO05D008332 2.0e-22 109.8 173 42.2
COL.COLO4_34251 Corchorus olitorius HOM05D006970 ORTHO05D008332 2.7e-22 109.4 168 41.7
Thecc.09G184300 Theobroma cacao HOM05D006970 ORTHO05D008332 2.7e-22 109.4 168 42.3
Duzib168G1017 Durio zibethinus HOM05D006970 ORTHO05D008332 3.5e-22 109.0 155 44.5
Cfa013442 Carpinus fangiana HOM05D006970 ORTHO05D008332 4.5e-22 108.6 162 43.8
Duzib168G1189 Durio zibethinus HOM05D006970 ORTHO05D008332 4.5e-22 108.6 158 40.5
Glyma.09G058700 Glycine max HOM05D006970 ORTHO05D008332 4.5e-22 108.6 168 41.7
Manes.06G020600 Manihot esculenta HOM05D006970 ORTHO05D008332 5.9e-22 108.2 172 40.7
Migut.L01891 Erythranthe guttata HOM05D006970 ORTHO05D008332 7.7e-22 107.8 150 43.3
Rhsim01G0118800 Rhododendron simsii HOM05D006970 ORTHO05D008332 7.7e-22 107.8 171 42.7
Cfa013440 Carpinus fangiana HOM05D006970 ORTHO05D008332 1.0e-21 107.5 166 42.8
TPR.G5397 Trifolium pratense HOM05D006970 ORTHO05D008332 1.0e-21 107.5 168 40.5
Cfa013441 Carpinus fangiana HOM05D006970 ORTHO05D008332 1.3e-21 107.1 161 42.2
Potri.006G076500 Populus trichocarpa HOM05D006970 ORTHO05D008332 1.3e-21 107.1 165 44.2
Prupe.1G076900 Prunus persica HOM05D006970 ORTHO05D008332 1.3e-21 107.1 188 40.4
RcHm_v2.0_Chr4g0399841 Rosa chinensis HOM05D006970 ORTHO05D008332 1.3e-21 107.1 182 41.8
Peaxi162Scf00324g10017 Petunia axillaris HOM05D006970 ORTHO05D008332 1.7e-21 106.7 177 37.3
Gohir.D05G003200 Gossypium hirsutum HOM05D006970 ORTHO05D008332 2.2e-21 106.3 151 46.4
Peaxi162Scf00324g00005 Petunia axillaris HOM05D006970 ORTHO05D008332 2.9e-21 105.9 177 36.2
Haze_22007 Corylus avellana HOM05D006970 ORTHO05D008332 3.8e-21 105.5 162 42.0
Gohir.A05G002800 Gossypium hirsutum HOM05D006970 ORTHO05D008332 3.8e-21 105.5 147 47.6
Thecc.09G184400 Theobroma cacao HOM05D006970 ORTHO05D008332 5.0e-21 105.1 184 38.6
Migut.O00829 Erythranthe guttata HOM05D006970 ORTHO05D008332 8.5e-21 104.4 152 42.1
Phvul.003G142300 Phaseolus vulgaris HOM05D006970 ORTHO05D008332 8.5e-21 104.4 169 39.1
CiPaw.08G033400 Carya illinoinensis HOM05D006970 ORTHO05D008332 1.1e-20 104.0 175 42.3
Phvul.009G237000 Phaseolus vulgaris HOM05D006970 ORTHO05D008332 1.5e-20 103.6 168 40.5
Glyma.15G164800 Glycine max HOM05D006970 ORTHO05D008332 1.9e-20 103.2 168 42.9
VMungo1309G0689 Vigna mungo HOM05D006970 ORTHO05D008332 1.9e-20 103.2 168 39.9
COL.COLO4_34244 Corchorus olitorius HOM05D006970 ORTHO05D008332 2.5e-20 102.8 145 44.1
MD13G1243500 Malus domestica HOM05D006970 ORTHO05D008332 2.5e-20 102.8 182 39.0
Oeu015404.1 Olea europaea HOM05D006970 ORTHO05D008332 2.5e-20 102.8 173 39.9
Haze_22008 Corylus avellana HOM05D006970 ORTHO05D008332 3.2e-20 102.4 150 43.3
MD16G1250000 Malus domestica HOM05D006970 ORTHO05D008332 3.2e-20 102.4 194 36.6
Dinv41166 Davidia involucrata HOM05D006970 ORTHO05D008332 5.5e-20 101.7 149 43.0
CiPaw.07G196100 Carya illinoinensis HOM05D006970 ORTHO05D008332 7.2e-20 101.3 181 40.3
Medtr4g127530 Medicago truncatula HOM05D006970 ORTHO05D008332 7.2e-20 101.3 167 40.1
Nn8g40876 Nelumbo nucifera HOM05D006970 ORTHO05D008332 7.2e-20 101.3 179 39.1
FvH4_4g07400 Fragaria vesca HOM05D006970 ORTHO05D008332 1.2e-19 100.5 180 40.0
FAN12G3539 Fragaria x ananassa HOM05D006970 ORTHO05D008332 1.2e-19 100.5 180 40.0
FAN22G0526 Fragaria x ananassa HOM05D006970 ORTHO05D008332 1.2e-19 100.5 180 40.0
Potri.018G143700 Populus trichocarpa HOM05D006970 ORTHO05D008332 1.2e-19 100.5 145 45.5
TAR626G0909 Trochodendron aralioides HOM05D006970 ORTHO05D008332 1.2e-19 100.5 172 41.3
PGR142G3285 Punica granatum HOM05D006970 ORTHO05D008332 2.1e-19 99.8 173 41.0
TAR383G0018 Trochodendron aralioides HOM05D006970 ORTHO05D008332 2.7e-19 99.4 174 39.7
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 3.6e-19 99.0 174 42.0
FAN17G1729 Fragaria x ananassa HOM05D006970 ORTHO05D008332 4.7e-19 98.6 184 39.1
FAN07G0294 Fragaria x ananassa HOM05D006970 ORTHO05D008332 6.1e-19 98.2 180 39.4
Lalb_Chr12g0199561 Lupinus albus HOM05D006970 ORTHO05D008332 6.1e-19 98.2 142 42.3
Sabra06G0057400 Salix brachista HOM05D006970 ORTHO05D008332 6.1e-19 98.2 165 42.4
Glyma.13G099800 Glycine max HOM05D006970 ORTHO05D008332 8.0e-19 97.8 169 39.1
Lj6g0012098 Lotus japonicus HOM05D006970 ORTHO05D008332 8.0e-19 97.8 173 41.0
vmacro20825 Vaccinium macrocarpon HOM05D006970 ORTHO05D008332 8.0e-19 97.8 168 38.7
Sabra18G0117100 Salix brachista HOM05D006970 ORTHO05D008332 1.0e-18 97.4 145 43.4
Eucgr.C00123 Eucalyptus grandis HOM05D006970 ORTHO05D008332 1.4e-18 97.1 182 35.7
Glyma.17G060200 Glycine max HOM05D006970 ORTHO05D008332 1.8e-18 96.7 170 39.4
Medtr2g037760 Medicago truncatula HOM05D006970 ORTHO05D008332 5.2e-18 95.1 170 39.4
SalBow5G5711 Salvia bowleyana HOM05D006970 ORTHO05D008332 5.2e-18 95.1 140 40.0
Ca_02084_v3 Cicer arietinum L. HOM05D006970 ORTHO05D008332 8.8e-18 94.4 167 40.7
Ca_02089_v3 Cicer arietinum L. HOM05D006970 ORTHO05D008332 8.8e-18 94.4 167 40.7
Lj4g0006636 Lotus japonicus HOM05D006970 ORTHO05D008332 2.0e-17 93.2 165 37.6
Nitab4.5_0001335g0030 Nicotiana tabacum HOM05D006970 ORTHO05D008332 2.0e-17 93.2 164 39.0
Psat1g144640 Pisum sativum HOM05D006970 ORTHO05D008332 2.0e-17 93.2 167 38.3
Solyc07g008930.1 Solanum lycopersicum HOM05D006970 ORTHO05D008332 5.7e-17 91.7 194 35.6
PGSC0003DMG400028750 Solanum tuberosum HOM05D006970 ORTHO05D008332 7.5e-17 91.3 180 34.4
PGSC0003DMG400028751 Solanum tuberosum HOM05D006970 ORTHO05D008332 7.5e-17 91.3 194 36.6
Lalb_Chr11g0074841 Lupinus albus HOM05D006970 ORTHO05D008332 9.8e-17 90.9 169 36.7
Nitab4.5_0000007g0270 Nicotiana tabacum HOM05D006970 ORTHO05D008332 1.3e-16 90.5 167 39.5
arahy.Tifrunner.gnm1.ann1.7NZ92R Arachis hypogaea HOM05D006970 ORTHO05D008332 4.8e-16 88.6 190 35.3
ECA240G2451 Erigeron canadensis HOM05D006970 ORTHO05D008332 1.8e-15 86.7 103 40.8
HPP92_017115 Vanilla planifolia HOM05D006970 ORTHO05D008332 2.4e-15 86.3 138 37.0
CsaV3_2G008660 Cucumis sativus L. HOM05D006970 ORTHO05D008332 4.1e-15 85.5 147 41.5
TAR625G0812 Trochodendron aralioides HOM05D006970 ORTHO05D008332 7.0e-15 84.7 156 37.2
DCAR_019800 Daucus carota HOM05D006970 ORTHO05D008332 1.2e-14 84.0 102 47.1
MELO3C003983.2 Cucumis melo HOM05D006970 ORTHO05D008332 4.5e-14 82.0 151 40.4
Eucgr.C02224 Eucalyptus grandis HOM05D006970 ORTHO05D008332 5.9e-14 81.6 194 38.7
HPP92_021988 Vanilla planifolia HOM05D006970 ORTHO05D008332 1.0e-13 80.9 138 37.7
CDE02G0129 Ceratophyllum demersum HOM05D006970 ORTHO05D008332 1.7e-13 80.1 171 31.6
HPP92_017386 Vanilla planifolia HOM05D006970 ORTHO05D008332 1.7e-13 80.1 171 33.3
SGA_v2.0_scaffold46G17371 Striga asiatica HOM05D006970 ORTHO05D008332 2.2e-13 79.7 176 33.5
CDE04G3128 Ceratophyllum demersum HOM05D006970 ORTHO05D008332 2.9e-13 79.3 174 31.0
ClCG11G011830 Citrullus lanatus HOM05D006970 ORTHO05D008332 2.9e-13 79.3 149 36.2
HPP92_017039 Vanilla planifolia HOM05D006970 ORTHO05D008332 2.9e-13 79.3 155 34.2
Lalb_Chr08g0231751 Lupinus albus HOM05D006970 ORTHO05D008332 1.1e-12 77.4 169 36.1
Lalb_Chr08g0231861 Lupinus albus HOM05D006970 ORTHO05D008332 1.1e-12 77.4 169 36.1
MBI13_g31534_MAGBIO Magnolia biondii HOM05D006970 ORTHO05D008332 2.5e-12 76.3 148 34.5
Aqoxy7G02762 Aquilegia oxysepala HOM05D006970 ORTHO05D008332 3.6e-11 72.4 152 34.2
ATR0626G126 Amborella trichopoda HOM05D006970 ORTHO05D008332 1.4e-10 70.5 151 36.4
Sed0005019 Sechium edule HOM05D006970 ORTHO05D008332 1.8e-10 70.1 148 34.5
Sed0023812 Sechium edule HOM05D006970 ORTHO05D008332 3.0e-10 69.3 135 37.8
DCAR_019820 Daucus carota HOM05D000178 ORTHO05D001582 1.2e-09 67.4 167 33.5
Lsat_1_v5_gn_8_69441 Lactuca sativa HOM05D006970 ORTHO05D008332 2.0e-09 66.6 88 38.6
ECA236G3316 Erigeron canadensis HOM05D006970 ORTHO05D008332 2.6e-09 66.2 100 36.0
Os06g0700300 Oryza sativa ssp. japonica HOM05D006970 ORTHO05D008332 9.8e-09 64.3 113 38.9
Zm00001eb226840 Zea mays HOM05D006970 ORTHO05D008332 6.3e-08 61.6 141 34.8
TPR.G30780 Trifolium pratense HOM05D006970 ORTHO05D008332 1.4e-07 60.5 124 37.1
HanXRQChr05g0140891 Helianthus annuus HOM05D006970 ORTHO05D008332 7.0e-07 58.2 104 33.7
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 5.9e-06 55.1 93 35.5


User provided reference genes

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