Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 4.4e-97 357.8 167 100.0
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.2e-78 296.6 166 80.7
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 5.1e-77 291.2 166 77.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.5e-76 289.7 166 80.1
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.5e-76 289.7 166 81.3
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 7.3e-76 287.3 166 77.1
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.2e-75 286.6 166 77.7
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.8e-75 285.4 166 77.1
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.7e-75 284.6 166 80.1
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.7e-75 284.6 166 80.1
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.7e-75 284.6 166 80.1
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 4.7e-75 284.6 166 77.7
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 6.2e-75 284.3 166 77.7
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 8.1e-75 283.9 166 77.1
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 8.1e-75 283.9 166 78.3
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.4e-74 283.1 166 77.7
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.8e-74 282.7 166 78.9
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.8e-74 282.7 166 78.3
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.5e-73 279.6 166 77.7
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 3.4e-73 278.5 166 77.1
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.4e-73 278.5 166 76.5
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 4.4e-73 278.1 166 75.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 4.4e-73 278.1 166 75.3
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.8e-73 277.7 166 75.9
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 9.9e-73 276.9 166 75.9
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 6.4e-72 274.2 166 76.5
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 6.4e-72 274.2 166 74.7
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.1e-71 273.5 166 74.1
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.4e-71 273.1 166 76.5
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.9e-71 272.7 166 75.3
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.9e-71 272.7 166 72.3
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.2e-71 271.9 166 73.5
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 5.4e-71 271.2 166 74.1
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.2e-70 270.0 166 72.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 3.5e-70 268.5 166 73.5
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.3e-69 266.5 166 72.3
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.7e-69 266.2 166 73.5
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.9e-68 262.7 166 72.3
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 7.3e-68 260.8 166 71.7
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 9.6e-68 260.4 164 70.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.6e-67 259.6 166 69.9
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 2.1e-67 259.2 166 71.1
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.8e-67 258.8 164 68.3
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.8e-67 258.8 166 69.9
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 3.6e-67 258.5 166 71.1
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.8e-67 258.1 164 68.9
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 4.8e-67 258.1 165 73.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 4.8e-67 258.1 173 69.4
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 6.2e-67 257.7 166 69.3
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-66 255.8 166 71.1
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 3.1e-66 255.4 166 70.5
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 9.0e-66 253.8 166 69.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 9.0e-66 253.8 166 69.3
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.0e-65 252.7 167 70.1
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 68.5
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 4.5e-65 251.5 165 70.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.2e-64 249.2 166 66.9
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 67.7
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 67.7
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 6.4e-64 247.7 166 68.1
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 8.4e-64 247.3 167 67.1
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 8.4e-64 247.3 188 63.8
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.4e-63 246.5 164 67.1
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.9e-63 246.1 167 67.1
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 2.4e-63 245.7 167 67.1
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 2.4e-63 245.7 167 67.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.4e-63 245.7 168 66.7
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.2e-63 245.4 168 65.5
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 3.2e-63 245.4 166 69.3
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.2e-63 245.4 166 68.1
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 4.2e-63 245.0 167 67.1
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 7.1e-63 244.2 218 56.0
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.3e-63 243.8 168 64.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 9.3e-63 243.8 167 66.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.2e-62 243.4 168 64.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.6e-62 243.0 166 64.5
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-62 242.7 167 65.9
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.1e-62 242.7 166 65.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.7e-62 242.3 161 65.8
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 2.7e-62 242.3 167 66.5
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 4.6e-62 241.5 166 66.9
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 6.0e-62 241.1 166 63.9
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 7.9e-62 240.7 166 67.5
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.0e-61 240.4 167 65.9
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 1.3e-61 240.0 167 65.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.3e-61 239.2 167 67.1
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 6.7e-61 237.7 177 63.3
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 6.7e-61 237.7 133 78.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 8.7e-61 237.3 166 66.9
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.3e-60 235.0 181 60.8
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 5.6e-60 234.6 202 58.4
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 9.6e-60 233.8 166 65.1
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 9.6e-60 233.8 166 65.1
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.1e-59 232.6 166 62.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.8e-59 232.3 166 63.9
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.5e-57 226.5 167 66.5
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.0e-57 226.1 165 63.6
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 2.0e-57 226.1 166 60.8
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.7e-56 223.0 188 57.4
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 6.4e-56 221.1 166 61.4
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.8e-53 213.0 166 59.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 2.3e-53 212.6 167 55.1
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 3.3e-52 208.8 189 52.4
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.8e-51 204.9 126 71.4
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.4e-50 202.6 165 56.4
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 4.0e-50 201.8 166 56.6
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.3e-50 201.4 178 52.8
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 3.4e-49 198.7 166 58.4
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.3e-48 196.8 127 69.3
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.9e-47 193.0 165 56.4
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 2.1e-46 189.5 164 57.3
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 6.0e-46 188.0 131 65.6
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.3e-45 186.8 134 62.7
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 7.4e-44 181.0 176 47.7
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.3e-43 180.3 128 65.6
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 2.8e-43 179.1 166 49.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.8e-43 179.1 166 48.2
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.4e-42 176.8 166 51.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 2.0e-41 172.9 176 52.8
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 7.6e-41 171.0 116 65.5
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.3e-40 170.2 165 49.1
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.2e-39 165.6 150 56.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.2e-39 165.2 139 56.8
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.2e-38 163.7 170 47.1
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.6e-38 163.3 96 75.0
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.6e-38 163.3 96 75.0
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.6e-38 163.3 165 48.5
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-37 160.2 134 53.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.8e-37 159.8 133 54.1
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 8.8e-37 157.5 131 61.8
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.9e-36 156.4 97 69.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-35 151.8 131 52.7
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.8e-34 149.8 104 63.5
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 9.1e-34 147.5 163 44.8
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 6.7e-29 131.3 97 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.5e-28 130.2 128 47.7
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 3.4e-25 119.0 152 46.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 7.7e-25 117.9 182 39.0
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.0e-24 117.5 164 39.6
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.9e-24 115.9 79 65.8
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.5e-23 112.8 133 41.4
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.2e-23 112.5 164 39.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 4.2e-23 112.1 112 52.7
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.7e-19 100.1 89 49.4
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.1e-18 95.9 101 49.5
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.6e-14 83.6 167 30.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.2e-11 73.2 64 51.6
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.2e-11 73.2 64 51.6
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-11 72.0 57 56.1
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-11 72.0 65 50.8
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.3e-11 71.6 110 33.6
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.4e-10 70.5 108 34.3
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 5.3e-10 68.6 172 30.2
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.1e-10 67.8 57 54.4
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.7e-09 66.2 64 48.4
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.9e-09 65.1 64 46.9
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.0e-08 64.3 40 65.0
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 8.5e-08 61.2 123 31.7
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.5e-07 59.7 84 36.9
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 4.2e-07 58.9 44 59.1
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 5.5e-07 58.5 46 56.5
Atru.chr2.3707 Acer truncatum HOM05D004267 ORTHO05D000004 4.7e-06 55.5 45 48.9
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 6.1e-06 55.1 50 58.0


User provided reference genes

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