Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 4.2e-71 271.6 169 100.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.9e-23 113.2 150 54.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 4.3e-23 112.1 122 59.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.2e-22 108.2 159 59.1
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.4e-21 107.1 136 53.7
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.4e-21 107.1 137 54.0
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.2e-21 105.1 153 51.6
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 6.8e-21 104.8 136 47.8
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 7.5e-20 101.3 147 53.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 3.7e-19 99.0 137 50.4
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.7e-19 99.0 140 49.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 3.7e-19 99.0 134 51.5
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 4.9e-19 98.6 62 75.8
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 8.3e-19 97.8 110 55.5
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 8.3e-19 97.8 110 55.5
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 8.3e-19 97.8 110 55.5
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 8.3e-19 97.8 62 79.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.1e-18 97.4 138 53.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.4e-18 97.1 120 53.3
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.9e-18 96.7 110 54.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.4e-18 96.3 62 72.6
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.2e-18 95.9 130 50.8
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 7.0e-18 94.7 99 54.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 7.0e-18 94.7 105 52.4
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 9.2e-18 94.4 138 47.1
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 9.2e-18 94.4 139 48.9
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.7e-17 92.8 72 66.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 3.5e-17 92.4 140 46.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 3.5e-17 92.4 140 46.4
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.0e-16 90.9 71 63.4
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.0e-16 90.9 133 44.4
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-16 90.9 132 47.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.3e-16 89.7 146 46.6
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 3.0e-16 89.4 59 79.7
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.1e-16 88.6 64 67.2
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.6e-16 88.2 125 46.4
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 8.6e-16 87.8 62 72.6
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 8.6e-16 87.8 140 47.9
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 8.6e-16 87.8 48 85.4
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.1e-15 87.4 166 52.4
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-15 87.4 133 50.4
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.1e-15 87.4 79 59.5
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-15 87.0 135 44.4
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.9e-15 86.7 116 48.3
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.9e-15 86.7 116 48.3
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.9e-15 86.7 116 48.3
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.5e-15 86.3 60 78.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 5.6e-15 85.1 60 76.7
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.6e-15 85.1 133 49.6
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 7.3e-15 84.7 112 42.9
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 7.3e-15 84.7 53 77.4
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 9.5e-15 84.3 134 44.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.5e-15 84.3 125 48.8
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 9.5e-15 84.3 124 50.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.2e-14 84.0 110 54.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.2e-14 84.0 122 50.0
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.2e-14 84.0 90 54.4
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.2e-14 84.0 119 49.6
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.2e-14 84.0 52 86.5
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.6e-14 83.6 137 46.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 2.1e-14 83.2 125 46.4
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.1e-14 83.2 49 79.6
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.1e-14 83.2 48 81.2
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.1e-14 83.2 125 48.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.1e-14 83.2 48 81.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.1e-14 83.2 116 49.1
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.1e-14 83.2 142 48.6
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.8e-14 82.8 122 47.5
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 3.6e-14 82.4 111 50.5
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 3.6e-14 82.4 45 86.7
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.6e-14 82.4 127 47.2
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 3.6e-14 82.4 129 52.7
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 3.6e-14 82.4 56 82.1
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.2e-14 81.6 118 49.2
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 6.2e-14 81.6 50 88.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 8.1e-14 81.3 45 82.2
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.1e-14 81.3 106 49.1
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.1e-13 80.9 46 80.4
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.1e-13 80.9 46 80.4
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.1e-13 80.9 46 80.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.4e-13 80.5 50 72.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.4e-13 80.5 50 72.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.8e-13 80.1 127 44.9
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.3e-13 79.7 61 72.1
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 3.1e-13 79.3 44 84.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 5.2e-13 78.6 134 47.8
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 5.2e-13 78.6 120 45.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 5.2e-13 78.6 43 81.4
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 5.2e-13 78.6 52 80.8
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 6.8e-13 78.2 54 72.2
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 6.8e-13 78.2 94 52.1
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 8.9e-13 77.8 137 46.0
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 8.9e-13 77.8 59 64.4
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.2e-12 77.4 43 83.7
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.5e-12 77.0 65 64.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-12 76.6 78 57.7
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.0e-12 76.6 53 79.2
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.0e-12 76.6 42 83.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.4e-12 75.9 43 81.4
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 3.4e-12 75.9 84 47.6
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 4.4e-12 75.5 39 87.2
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 5.8e-12 75.1 120 46.7
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 5.8e-12 75.1 89 52.8
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 7.5e-12 74.7 43 79.1
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 7.5e-12 74.7 43 79.1
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 9.9e-12 74.3 43 79.1
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.3e-11 73.9 125 46.4
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.3e-11 73.9 42 81.0
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.3e-11 73.9 81 53.1
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.7e-11 73.6 107 49.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.9e-11 72.8 107 49.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 6.4e-11 71.6 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 6.4e-11 71.6 35 91.4
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 6.4e-11 71.6 42 78.6
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.4e-10 70.5 47 72.3
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.9e-10 70.1 83 45.8
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.9e-10 70.1 42 76.2
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.9e-10 70.1 39 79.5
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.4e-10 69.7 58 62.1
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 5.4e-10 68.6 38 78.9
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 9.2e-10 67.8 35 80.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.2e-09 67.4 136 47.1
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.6e-09 67.0 35 80.0
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 2.7e-09 66.2 107 44.9
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.5e-09 65.9 117 42.7
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.0e-08 64.3 196 32.7
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.0e-08 64.3 92 43.5
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 4.7e-06 55.5 46 65.2


User provided reference genes

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