Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.6e-103 378.3 190 100.0
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.1e-86 322.0 167 94.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 5.2e-86 321.2 169 93.5
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 6.8e-86 320.9 167 92.8
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.5e-85 319.7 167 92.2
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.0e-85 319.3 167 94.0
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.0e-85 319.3 167 92.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.0e-85 319.3 167 92.2
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.8e-85 317.8 167 92.8
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 7.5e-85 317.4 167 95.2
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.3e-84 316.6 167 94.0
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.3e-84 316.6 167 92.8
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.3e-84 316.6 167 92.2
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.7e-84 316.2 167 92.8
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.2e-84 315.8 167 92.2
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.2e-84 315.8 167 92.8
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 2.9e-84 315.5 167 91.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 2.9e-84 315.5 167 92.2
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.9e-84 314.7 167 91.0
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.1e-83 313.5 167 91.0
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.1e-83 313.5 167 91.6
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.4e-83 313.2 173 90.2
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.4e-83 313.2 167 90.4
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.4e-83 313.2 167 91.0
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.4e-83 312.4 167 90.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.2e-83 312.0 167 91.6
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.2e-83 312.0 167 89.8
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.1e-83 311.6 167 89.8
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 5.4e-83 311.2 166 91.6
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 5.4e-83 311.2 167 91.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 5.4e-83 311.2 167 89.8
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 7.0e-83 310.8 167 90.4
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.0e-83 310.8 167 89.2
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 7.0e-83 310.8 167 92.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.2e-83 310.5 167 88.6
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.0e-82 309.3 167 91.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 2.0e-82 309.3 167 92.8
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.0e-82 309.3 167 89.2
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 2.7e-82 308.9 166 90.4
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.7e-82 308.9 167 89.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.5e-82 308.5 174 89.7
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 4.6e-82 308.1 168 89.9
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.0e-82 307.8 167 90.4
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.0e-82 307.8 167 90.4
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.0e-82 307.8 167 90.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 7.8e-82 307.4 167 88.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-81 307.0 168 89.3
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.0e-81 307.0 194 80.9
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.0e-81 307.0 167 89.8
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.0e-81 307.0 167 89.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.3e-81 306.6 167 91.6
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 2.3e-81 305.8 167 89.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.0e-81 304.7 167 89.8
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 6.6e-81 304.3 167 88.6
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.1e-80 303.5 167 89.8
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.5e-80 303.1 167 89.8
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-80 301.6 167 89.8
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.6e-80 301.2 167 88.6
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 9.5e-80 300.4 167 87.4
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 9.5e-80 300.4 167 87.4
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.2e-79 300.1 168 89.9
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.6e-79 298.5 167 85.0
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.6e-79 298.5 166 86.1
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 4.7e-79 298.1 167 85.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 6.2e-79 297.7 166 86.1
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 8.1e-79 297.4 166 85.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 8.1e-79 297.4 166 86.1
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.1e-78 297.0 166 86.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.4e-78 296.6 168 84.5
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.4e-78 296.6 167 85.6
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.4e-78 296.6 179 81.0
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.4e-78 296.6 168 88.7
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.8e-78 296.2 167 88.6
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.3e-78 295.8 166 84.9
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.1e-78 295.4 166 84.9
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 4.0e-78 295.0 166 85.5
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 5.2e-78 294.7 166 85.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 5.2e-78 294.7 166 85.5
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 5.2e-78 294.7 169 87.0
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 6.8e-78 294.3 166 84.9
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 8.9e-78 293.9 189 77.8
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 8.9e-78 293.9 160 90.6
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 8.9e-78 293.9 168 87.5
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.2e-77 293.5 168 88.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.5e-77 293.1 167 87.4
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.5e-77 293.1 169 83.4
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.0e-77 292.7 168 86.9
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.6e-77 292.4 166 84.3
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.6e-77 292.4 167 86.2
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.6e-77 292.4 167 86.2
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.4e-77 292.0 166 84.3
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.4e-77 292.0 167 85.6
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.4e-77 292.0 189 80.4
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 5.8e-77 291.2 169 84.6
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 7.5e-77 290.8 166 85.5
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.8e-77 290.4 167 87.4
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 9.8e-77 290.4 168 86.9
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-76 290.0 167 83.8
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.3e-76 290.0 167 83.8
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.3e-76 290.0 167 83.8
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.3e-76 290.0 168 86.9
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.7e-76 289.7 167 83.8
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.7e-76 289.7 160 88.8
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.9e-76 288.9 166 84.9
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.9e-76 288.9 171 84.2
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 3.7e-76 288.5 167 83.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.1e-75 287.0 160 87.5
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.1e-75 287.0 166 83.7
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.4e-75 286.6 167 83.2
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 2.4e-75 285.8 160 86.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.2e-75 285.4 169 84.6
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 7.1e-75 284.3 159 85.5
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.7e-74 282.3 169 82.8
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.6e-74 281.6 167 79.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.0e-73 278.9 161 85.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 8.6e-73 277.3 150 92.7
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 8.6e-73 277.3 167 83.8
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-72 276.9 252 61.9
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.9e-72 276.2 170 83.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.9e-72 276.2 170 83.5
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 5.6e-72 274.6 167 80.8
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.6e-71 273.1 170 81.8
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.4e-70 270.0 167 82.6
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.9e-70 267.3 167 81.4
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.3e-68 263.5 167 79.6
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 2.7e-66 255.8 148 85.1
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 6.6e-65 251.1 157 76.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.1e-62 242.3 168 72.6
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.2e-61 240.4 167 71.3
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 5.8e-61 238.0 173 68.2
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.7e-57 226.5 161 68.3
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.5e-56 223.4 167 71.9
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 7.3e-56 221.1 168 64.9
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 6.9e-54 214.5 174 62.6
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 8.1e-47 191.0 170 62.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 9.0e-46 187.6 168 57.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.6e-45 186.0 124 75.8
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.7e-44 183.3 100 93.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.2e-39 164.9 102 82.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 7.6e-37 157.9 116 69.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.9e-32 143.3 80 87.5
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 4.5e-29 132.1 163 41.7
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 5.0e-28 128.6 75 84.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 5.0e-28 128.6 75 84.0
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.5e-27 126.3 166 40.4
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 3.7e-23 112.5 100 60.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.3e-22 108.6 54 92.6
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-21 105.5 54 90.7
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.5e-21 105.5 55 90.9
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.2e-20 103.2 209 39.2
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 6.5e-20 101.7 62 77.4
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 7.2e-19 98.2 82 65.9
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.4e-17 94.0 161 36.6
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 5.1e-17 92.0 165 35.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 9.1e-14 81.3 90 50.0
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.9e-11 73.6 51 72.5
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.9e-11 73.6 88 48.9
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.5e-11 73.2 45 75.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.2e-11 72.4 37 91.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.0e-09 67.8 38 86.8
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-09 67.8 55 63.6
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 3.0e-09 66.2 38 76.3
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 3.0e-09 66.2 38 76.3
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 5.1e-09 65.5 50 66.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 3.3e-08 62.8 41 75.6
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.7e-08 62.0 42 69.0
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 4.8e-07 58.9 43 65.1
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 6.3e-07 58.5 43 65.1


User provided reference genes

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