Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.5e-114 415.6 230 100.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.5e-108 396.4 230 93.9
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.2e-79 300.4 226 73.0
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 3.1e-77 292.4 231 73.6
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 7.0e-77 291.2 228 72.8
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.2e-76 290.4 232 71.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 3.5e-76 288.9 234 71.4
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 5.9e-76 288.1 225 66.2
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.3e-75 287.0 226 63.3
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.7e-75 286.6 226 64.2
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.9e-75 285.8 229 69.9
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 8.5e-75 284.3 257 66.5
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 8.5e-75 284.3 241 65.1
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.1e-74 283.9 233 63.5
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.5e-74 283.5 234 65.0
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.9e-74 283.1 233 65.7
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.5e-74 282.7 232 62.9
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 9.4e-74 280.8 229 72.1
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 9.4e-74 280.8 234 68.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 8.0e-73 277.7 235 61.7
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 3.0e-72 275.8 226 70.4
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.2e-72 275.0 231 63.2
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 6.8e-72 274.6 226 61.9
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 8.8e-72 274.2 230 60.9
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 8.8e-72 274.2 242 59.9
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.2e-71 273.9 235 61.3
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.5e-71 273.5 230 62.2
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.5e-71 273.5 223 62.8
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 4.4e-71 271.9 230 60.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 5.7e-71 271.6 223 62.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.3e-70 270.4 226 60.6
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.2e-70 269.6 238 66.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 2.2e-70 269.6 223 60.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.2e-70 269.6 230 61.3
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.8e-70 269.2 230 64.8
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.8e-70 269.2 240 65.8
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 3.7e-70 268.9 224 67.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 4.8e-70 268.5 236 64.4
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.1e-69 267.3 229 65.1
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.1e-69 267.3 237 66.7
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.1e-69 267.3 240 64.6
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.4e-69 266.9 236 58.1
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.4e-69 266.2 230 73.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 4.1e-69 265.4 236 65.7
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 5.4e-69 265.0 229 64.2
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 7.0e-69 264.6 230 60.0
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 7.0e-69 264.6 236 65.7
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-68 263.8 241 64.7
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-68 263.5 242 63.6
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-68 263.5 242 63.6
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.6e-68 263.5 230 59.6
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.7e-68 262.7 240 65.4
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.7e-68 262.7 226 58.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 2.7e-68 262.7 243 60.1
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.7e-68 262.7 236 64.8
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 4.5e-68 261.9 233 57.5
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 4.5e-68 261.9 241 64.3
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.9e-68 261.5 240 65.0
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.3e-67 260.4 241 63.9
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-67 260.4 235 63.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.7e-67 260.0 232 63.8
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.7e-67 260.0 253 59.7
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.7e-67 260.0 221 62.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.9e-67 259.2 233 57.9
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 2.9e-67 259.2 227 58.1
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 1.5e-66 256.9 235 55.7
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.5e-66 256.1 241 64.3
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 4.2e-66 255.4 227 57.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 5.5e-66 255.0 225 58.7
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.2e-65 253.8 250 58.4
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.5e-63 246.9 237 54.0
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 2.0e-63 246.5 247 57.1
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 2.6e-63 246.1 239 62.3
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 4.4e-63 245.4 224 58.0
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.2e-62 243.0 252 56.0
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.2e-62 243.0 236 53.0
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 4.9e-62 241.9 231 61.5
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 8.3e-62 241.1 344 47.7
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.1e-61 240.7 252 56.7
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 3.1e-61 239.2 238 58.4
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.2e-61 237.7 235 55.3
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.7e-59 233.4 235 55.7
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 8.6e-59 231.1 230 52.2
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 2.5e-58 229.6 237 59.5
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.6e-57 225.7 253 57.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 1.4e-56 223.8 218 56.4
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 8.9e-56 221.1 250 57.2
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.7e-54 216.9 232 58.6
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 6.4e-54 214.9 230 49.6
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.4e-53 213.8 222 53.2
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.4e-53 213.8 232 56.5
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.4e-53 213.8 232 56.9
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-53 213.0 222 53.6
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 3.2e-53 212.6 235 49.4
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 4.1e-53 212.2 234 55.1
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 9.2e-53 211.1 227 53.3
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.3e-51 206.5 188 65.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 7.3e-50 201.4 218 49.1
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.1e-49 199.9 185 54.1
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 8.0e-49 198.0 222 49.1
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.1e-48 196.1 228 53.1
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 7.5e-47 191.4 224 48.2
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 7.5e-47 191.4 224 48.2
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 7.5e-47 191.4 235 45.5
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-46 190.7 162 58.0
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.2e-46 189.9 233 54.9
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-44 184.1 162 56.8
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.2e-44 184.1 162 56.8
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.3e-43 179.9 167 56.3
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 1.8e-40 170.2 224 41.5
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 4.9e-38 162.2 217 41.9
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.9e-37 160.2 235 43.0
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.1e-33 146.7 136 65.4
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 2.1e-33 146.7 224 37.1
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.4e-29 134.0 132 59.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 4.2e-29 132.5 231 40.7
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.1e-25 120.2 227 34.4
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.1e-25 120.2 227 34.4
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-25 119.4 89 66.3
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.1e-24 117.9 124 50.8
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 9.3e-21 104.8 136 47.1
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 6.0e-20 102.1 106 49.1
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-15 87.4 79 57.0
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.5e-15 87.4 152 36.2
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.7e-14 84.0 159 35.8
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-13 81.3 116 39.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.1e-13 81.3 116 39.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.1e-13 81.3 45 73.3
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 2.4e-13 80.1 204 34.8
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 5.4e-13 79.0 116 38.8
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 5.4e-13 79.0 116 38.8
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-12 77.8 116 38.8
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.5e-10 70.1 125 35.2
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 7.6e-07 58.5 282 28.4
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 7.6e-07 58.5 34 76.5
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-06 57.8 50 54.0
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 4.9e-06 55.8 186 26.9


User provided reference genes

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