Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.1e-205 717.2 355 100.0
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 8.1e-149 530.8 393 74.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.9e-97 360.1 390 53.8
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.9e-97 360.1 387 54.5
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 2.3e-95 353.2 386 53.1
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 5.1e-95 352.1 389 54.0
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 5.1e-95 352.1 388 53.9
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 8.8e-95 351.3 385 54.8
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 5.3e-92 342.0 387 53.2
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.0e-91 340.1 387 51.4
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 2.6e-91 339.7 379 52.8
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 3.8e-90 335.9 392 51.0
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.2e-89 332.8 376 52.1
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.2e-89 332.8 381 51.7
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.2e-89 332.4 376 52.4
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 4.2e-89 332.4 392 50.5
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 5.5e-89 332.0 386 50.8
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 9.4e-89 331.3 392 52.6
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 3.6e-88 329.3 381 50.7
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.0e-87 327.8 381 51.4
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.8e-87 327.0 372 52.7
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 2.3e-87 326.6 385 49.6
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 5.2e-87 325.5 376 51.6
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.7e-87 325.1 376 51.6
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 3.3e-86 322.8 387 50.1
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 2.2e-85 320.1 386 50.3
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.8e-85 319.7 391 49.1
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 6.3e-85 318.5 376 51.1
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.1e-84 317.8 391 48.8
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.8e-84 317.0 391 48.8
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 2.4e-84 316.6 386 50.0
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.1e-84 316.2 383 49.1
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.1e-84 315.8 376 50.5
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.2e-83 314.3 388 48.2
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.2e-83 314.3 375 50.7
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 3.5e-83 312.8 388 48.2
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 5.9e-83 312.0 378 49.2
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 5.9e-83 312.0 391 47.3
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 6.5e-82 308.5 388 47.2
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.5e-81 307.4 385 49.6
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 2.1e-80 303.5 360 51.7
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 3.6e-80 302.8 382 50.0
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.4e-79 300.8 309 56.6
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.8e-79 300.4 383 48.0
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.2e-78 297.7 392 48.7
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 7.0e-76 288.5 380 47.1
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.2e-75 287.7 373 48.0
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 4.5e-75 285.8 378 49.5
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.5e-73 280.8 385 46.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 2.1e-72 276.9 380 45.8
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 2.7e-72 276.6 380 45.5
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 4.7e-72 275.8 378 45.5
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 4.7e-72 275.8 372 47.6
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.8e-71 273.9 333 51.1
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 2.3e-71 273.5 380 44.7
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.5e-70 270.8 370 47.8
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 2.6e-70 270.0 382 45.5
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 6.3e-69 265.4 398 43.5
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.1e-68 263.1 383 43.9
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.1e-68 263.1 312 50.6
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 5.4e-68 262.3 383 43.3
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 5.4e-68 262.3 380 43.9
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 2.7e-67 260.0 380 43.4
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 3.5e-67 259.6 391 44.8
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 3.5e-67 259.6 387 42.4
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 7.7e-67 258.5 367 45.2
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.7e-66 257.3 381 45.4
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 2.9e-66 256.5 312 49.4
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.9e-65 253.8 400 42.8
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.9e-65 253.8 400 42.8
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.8e-63 247.3 304 49.7
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 3.0e-63 246.5 241 59.3
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 7.5e-62 241.9 368 42.9
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 9.2e-60 235.0 314 47.1
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 5.9e-59 232.3 304 48.7
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.7e-58 230.7 285 49.1
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.3e-58 230.3 153 79.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 3.9e-58 229.6 283 49.5
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 4.3e-57 226.1 329 46.8
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.3e-55 220.3 347 41.2
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.2e-54 218.0 357 42.9
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 3.4e-54 216.5 289 43.9
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.2e-53 213.8 264 47.3
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 3.0e-50 203.4 256 48.0
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 5.6e-49 199.1 235 51.1
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 3.6e-48 196.4 285 43.9
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 2.7e-35 153.7 217 46.1
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 3.9e-34 149.8 250 39.6
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 4.7e-32 142.9 246 38.2
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.2e-27 128.3 91 70.3
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 6.0e-27 125.9 158 49.4
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 6.4e-21 105.9 199 37.7
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 6.9e-15 85.9 123 44.7
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.2e-13 80.9 185 35.7
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 2.9e-13 80.5 84 51.2


User provided reference genes

Program Settings