Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 6.4e-202 707.2 359 100.0
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 1.6e-136 490.0 359 70.5
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 6.1e-136 488.0 359 70.2
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 1.0e-135 487.3 359 70.5
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 5.7e-134 481.5 359 69.6
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 5.7e-134 481.5 359 69.9
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.6e-128 463.4 359 68.2
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 1.8e-127 459.9 351 66.7
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 3.0e-127 459.1 314 73.9
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 1.5e-126 456.8 359 66.6
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 2.2e-125 453.0 353 67.4
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 6.3e-125 451.4 357 64.1
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 8.2e-125 451.1 335 70.1
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 2.6e-123 446.0 359 64.6
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 2.6e-123 446.0 343 67.3
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 7.7e-123 444.5 344 66.6
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 6.5e-122 441.4 359 64.9
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.1e-121 440.7 357 65.8
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 1.5e-121 440.3 360 63.9
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 1.6e-120 436.8 336 67.0
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 2.7e-120 436.0 354 65.5
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 4.7e-120 435.3 310 70.3
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 6.1e-120 434.9 357 64.7
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 8.0e-120 434.5 367 63.5
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 5.2e-119 431.8 351 65.8
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 2.6e-118 429.5 310 69.7
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 3.3e-118 429.1 346 65.0
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 1.7e-117 426.8 358 63.1
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 2.8e-117 426.0 305 67.9
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 2.8e-117 426.0 313 69.6
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 4.8e-117 425.2 359 62.1
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 4.1e-116 422.2 358 62.8
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 7.7e-115 417.9 356 62.9
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 7.7e-115 417.9 353 61.5
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 1.3e-114 417.2 350 63.7
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 1.5e-113 413.7 350 60.0
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 2.5e-113 412.9 341 63.3
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 4.2e-113 412.1 355 62.0
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 9.4e-113 411.0 357 60.5
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 1.6e-112 410.2 344 61.9
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 6.1e-112 408.3 351 61.8
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 1.4e-111 407.1 354 59.9
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 1.8e-111 406.8 351 61.8
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 1.8e-111 406.8 351 61.8
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 1.8e-111 406.8 351 61.8
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 1.8e-111 406.8 351 61.8
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 3.0e-111 406.0 344 61.9
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 3.0e-111 406.0 351 61.5
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 3.0e-111 406.0 362 61.0
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 5.2e-111 405.2 341 61.9
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 6.8e-111 404.8 308 64.9
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 8.8e-111 404.4 342 62.0
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 8.8e-111 404.4 357 59.4
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 1.5e-110 403.7 360 61.1
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 2.6e-110 402.9 352 59.9
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 4.4e-110 402.1 348 61.2
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 5.7e-110 401.7 349 61.0
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 9.8e-110 401.0 348 61.2
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 1.3e-109 400.6 365 58.1
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 2.2e-109 399.8 343 60.3
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 3.7e-109 399.1 351 60.1
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 1.4e-108 397.1 313 63.6
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 1.4e-108 397.1 307 65.5
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 2.4e-108 396.4 341 61.6
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 4.1e-108 395.6 359 59.1
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 4.1e-108 395.6 309 65.4
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 5.4e-108 395.2 339 60.2
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 9.1e-108 394.4 352 59.7
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 2.0e-107 393.3 349 59.9
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 1.0e-106 391.0 349 58.5
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 5.0e-106 388.7 307 63.2
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 4.2e-105 385.6 299 62.5
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 4.2e-105 385.6 333 59.2
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 1.6e-104 383.6 359 58.5
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 2.3e-103 379.8 314 61.5
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 4.0e-103 379.0 371 54.7
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 6.8e-103 378.3 354 57.6
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 6.8e-103 378.3 336 59.8
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 8.9e-103 377.9 354 57.9
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 8.9e-103 377.9 306 62.4
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 1.5e-102 377.1 307 62.9
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 1.5e-102 377.1 302 63.6
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 1.3e-98 364.0 390 52.1
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 2.1e-96 356.7 342 55.6
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 2.8e-96 356.3 313 57.5
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 3.7e-93 345.9 270 64.4
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 6.0e-91 338.6 268 62.7
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 1.7e-90 337.0 269 61.3
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 5.0e-90 335.5 299 60.5
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 4.3e-89 332.4 337 54.3
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 3.4e-86 322.8 308 56.2
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 1.4e-84 317.4 308 55.5
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 3.0e-82 309.7 402 46.0
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 5.2e-79 298.9 266 56.4
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 7.5e-78 295.0 271 56.8
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 1.9e-76 290.4 304 51.0
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 3.5e-75 286.2 331 47.1
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 3.6e-64 249.6 265 53.6
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 1.8e-55 220.7 368 38.6
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 2.4e-55 220.3 133 80.5
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 9.0e-55 218.4 258 47.3
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 2.4e-52 210.3 211 53.6
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 5.4e-52 209.1 186 56.5
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 1.7e-45 187.6 198 52.5
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 2.5e-44 183.7 167 56.9
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 4.2e-44 183.0 129 65.1
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 5.5e-44 182.6 129 65.9
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 7.4e-41 172.2 194 52.6
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 3.8e-37 159.8 179 50.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.1e-36 158.3 124 64.5
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 1.0e-29 135.2 106 62.3
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 4.2e-28 129.8 236 36.9
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.2e-27 128.3 110 58.2
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 2.6e-22 110.5 196 32.1
Dinv20053 Davidia involucrata HOM05D006843 ORTHO05D008517 7.7e-14 82.4 118 39.0
Psat7g126680 Pisum sativum HOM05D006843 ORTHO05D008517 2.1e-11 74.3 62 59.7
ATR0926G001 Amborella trichopoda HOM05D006843 ORTHO05D008517 4.4e-09 66.6 56 62.5
Cre01.g054650 Chlamydomonas reinhardtii HOM05D006843 ORTHO05D008517 9.1e-07 58.9 96 32.3


User provided reference genes

Program Settings