Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 3.3e-225 784.6 379 100.0
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.1e-151 540.4 389 73.8
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 3.0e-141 505.8 394 68.0
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 8.4e-136 487.6 430 61.9
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.2e-135 485.7 397 66.8
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 9.3e-135 484.2 393 66.9
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.3e-133 480.3 394 66.5
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 3.3e-132 475.7 395 66.1
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 4.3e-132 475.3 390 65.6
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 6.9e-130 468.0 395 64.8
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.6e-129 466.1 397 65.5
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 4.9e-128 461.8 393 63.6
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 2.1e-126 456.4 394 62.9
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.9e-120 436.0 390 62.8
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 4.9e-120 435.3 390 60.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 7.9e-118 427.9 392 62.2
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 4.8e-115 418.7 387 60.2
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.6e-113 412.9 391 60.4
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 5.8e-113 411.8 399 58.6
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 2.5e-111 406.4 407 56.8
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 7.1e-111 404.8 407 56.8
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 2.7e-110 402.9 390 59.2
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 4.6e-110 402.1 401 58.9
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.1e-108 397.5 376 59.3
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.5e-108 397.1 392 58.2
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 5.7e-108 395.2 409 56.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.7e-107 392.5 393 59.3
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 6.9e-106 388.3 419 54.7
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 4.5e-105 385.6 390 57.7
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 7.2e-103 378.3 373 56.6
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 3.0e-101 372.9 379 57.0
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 3.0e-101 372.9 393 55.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 3.9e-101 372.5 329 62.0
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 5.1e-101 372.1 321 65.1
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 8.8e-101 371.3 320 62.5
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 5.7e-100 368.6 327 61.2
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 6.3e-99 365.2 540 44.6
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 6.3e-99 365.2 449 51.2
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.4e-98 363.2 440 52.0
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 2.4e-98 363.2 329 61.1
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 4.1e-98 362.5 417 53.0
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 1.2e-97 360.9 325 61.2
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.2e-97 360.9 399 54.4
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.5e-97 360.5 378 57.9
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.0e-97 360.1 415 54.0
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 5.9e-97 358.6 351 59.3
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 7.7e-97 358.2 357 59.1
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.7e-96 357.1 394 55.1
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.5e-95 353.2 374 55.6
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.2e-94 350.9 336 59.5
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 2.1e-94 350.1 384 54.2
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.0e-93 347.8 545 42.8
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 1.4e-93 347.4 397 54.2
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 3.9e-93 345.9 377 55.4
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.1e-92 344.4 382 54.2
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 3.3e-92 342.8 427 52.5
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 4.4e-92 342.4 384 56.2
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.3e-91 340.9 326 60.1
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 3.7e-91 339.3 392 55.6
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 1.4e-90 337.4 374 55.1
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 1.4e-90 337.4 374 55.1
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 2.4e-90 336.7 469 47.1
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 3.1e-90 336.3 381 54.9
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 9.1e-90 334.7 317 61.2
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 1.5e-89 334.0 378 54.5
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 7.7e-89 331.6 322 59.6
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 5.0e-88 328.9 328 57.9
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.4e-87 327.4 328 57.9
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 1.4e-87 327.4 393 54.2
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 2.0e-84 317.0 410 52.7
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 2.6e-84 316.6 375 51.5
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.8e-83 312.4 397 50.9
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 9.1e-82 308.1 334 53.9
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.0e-80 304.7 418 49.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.0e-80 302.4 394 51.3
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 6.5e-80 302.0 320 53.4
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.0e-77 294.7 403 50.1
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 9.7e-76 288.1 389 49.6
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 4.8e-75 285.8 257 60.3
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.1e-71 274.6 310 53.5
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 2.7e-70 270.0 417 45.1
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 6.3e-67 258.8 400 46.5
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.1e-66 258.1 406 46.3
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 4.1e-66 256.1 391 48.1
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 7.0e-66 255.4 405 45.4
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.5e-65 252.7 463 41.9
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.0e-64 251.5 357 45.7
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.7e-64 250.8 401 46.1
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 1.9e-63 247.3 235 59.6
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 9.5e-63 245.0 404 45.8
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 3.6e-62 243.0 293 51.2
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 4.7e-62 242.7 469 41.4
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 4.7e-62 242.7 380 47.4
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 6.1e-62 242.3 500 40.2
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 8.0e-62 241.9 315 47.6
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 8.0e-62 241.9 410 43.7
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 4.4e-60 236.1 199 59.8
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 7.0e-58 228.8 337 46.0
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 3.0e-53 213.4 390 43.6
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 3.0e-53 213.4 400 43.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 2.0e-52 210.7 377 44.0
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 8.3e-51 205.3 392 42.9
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 7.0e-50 202.2 382 42.9
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 9.2e-50 201.8 385 42.3
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.1e-46 190.7 485 35.9
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 6.4e-43 179.1 390 40.5
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 6.4e-43 179.1 390 40.5
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 1.4e-42 177.9 253 49.4
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 4.1e-42 176.4 344 42.2
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 9.2e-42 175.3 386 39.1
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 4.6e-41 172.9 247 47.0
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.3e-40 171.4 206 50.0
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.1e-37 161.8 300 40.7
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 2.3e-37 160.6 395 39.2
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 2.2e-35 154.1 408 36.8
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 9.2e-34 148.7 360 37.2
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 1.2e-33 148.3 310 41.0
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 1.4e-29 134.8 347 36.9
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.9e-26 124.4 309 37.5
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 5.6e-23 112.8 329 34.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.2e-22 111.7 299 35.5
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.6e-22 111.3 316 37.0
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.3e-21 106.3 416 32.7
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 8.4e-19 99.0 265 36.2
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 4.2e-18 96.7 344 33.1
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 7.8e-17 92.4 70 71.4
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.3e-16 91.7 334 31.4
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 1.1e-13 82.0 68 69.1
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 4.0e-13 80.1 74 60.8
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 2.9e-11 73.9 63 66.7
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 2.7e-09 67.4 72 58.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.8e-08 64.7 98 41.8
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 2.3e-08 64.3 153 35.9
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.5e-07 61.6 247 31.6
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.1e-06 57.8 54 51.9


User provided reference genes

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