Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.5e-247 859.0 402 100.0
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 4.0e-221 771.2 398 88.9
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.9e-219 764.2 399 88.0
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.2e-217 759.6 402 86.8
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.0e-216 756.5 399 85.7
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 2.8e-214 748.4 389 87.1
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 6.2e-214 747.3 393 87.0
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 6.9e-213 743.8 379 89.7
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.5e-212 742.7 379 88.4
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 4.5e-212 741.1 390 85.6
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 9.9e-212 740.0 376 89.1
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.7e-211 739.2 376 89.4
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 2.2e-211 738.8 380 86.6
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 3.8e-211 738.0 380 87.1
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 4.9e-211 737.6 380 87.9
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 6.4e-211 737.3 380 86.6
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 1.1e-210 736.5 415 82.9
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.4e-210 736.1 376 88.6
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 2.4e-210 735.3 388 87.1
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 4.2e-210 734.6 392 84.7
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.5e-210 734.2 390 85.1
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 9.3e-210 733.4 380 86.6
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.2e-209 733.0 377 87.0
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 1.2e-209 733.0 380 86.6
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 4.6e-209 731.1 392 85.5
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 4.6e-209 731.1 380 86.3
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 7.9e-209 730.3 377 86.7
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 7.9e-209 730.3 396 83.8
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.3e-208 729.6 379 87.3
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 1.3e-208 729.6 384 86.7
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.3e-208 729.6 379 86.3
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.3e-208 728.8 391 84.1
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 2.3e-208 728.8 384 86.7
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 3.0e-208 728.4 384 85.9
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 3.0e-208 728.4 384 85.9
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 3.0e-208 728.4 391 84.1
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 3.0e-208 728.4 380 86.1
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 3.9e-208 728.0 377 87.5
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.9e-208 728.0 405 82.2
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 5.1e-208 727.6 384 85.9
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 1.1e-207 726.5 382 84.6
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.9e-207 725.7 390 84.4
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.9e-207 725.7 380 86.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 4.3e-207 724.5 379 85.0
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 4.3e-207 724.5 384 84.9
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 5.6e-207 724.2 379 86.0
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 9.6e-207 723.4 383 84.6
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 9.6e-207 723.4 384 85.4
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.6e-206 722.6 378 86.2
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.6e-206 722.6 378 86.5
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.1e-206 722.2 384 85.4
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 2.1e-206 722.2 390 84.1
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 4.8e-206 721.1 384 85.2
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.8e-206 721.1 388 84.0
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 6.2e-206 720.7 378 85.2
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 6.2e-206 720.7 377 86.2
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 1.4e-205 719.5 390 83.3
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.8e-205 719.2 379 86.5
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 1.8e-205 719.2 379 85.8
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.8e-205 719.2 390 83.6
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.8e-205 719.2 398 82.7
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 4.0e-205 718.0 375 86.1
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 5.3e-205 717.6 379 86.0
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 2.6e-204 715.3 386 84.2
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.4e-204 714.9 379 85.5
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.4e-204 714.9 379 85.5
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 5.8e-204 714.1 390 83.3
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 5.8e-204 714.1 376 85.1
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 7.6e-204 713.8 379 85.0
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.7e-203 712.6 379 85.5
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 3.8e-203 711.4 384 84.1
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 6.5e-203 710.7 379 84.7
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 2.5e-202 708.8 383 83.8
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 2.5e-202 708.8 416 78.1
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 2.5e-202 708.8 416 78.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 5.5e-202 707.6 382 83.8
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.6e-201 706.1 395 82.3
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 1.6e-201 706.1 380 83.4
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 2.1e-201 705.7 379 84.7
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 6.0e-201 704.1 412 79.1
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-200 703.0 417 78.2
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 2.1e-198 695.7 384 82.3
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.8e-197 692.6 379 81.8
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 5.3e-197 691.0 379 82.1
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 6.9e-197 690.6 379 80.5
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.0e-196 689.1 398 79.6
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.6e-193 679.5 406 77.8
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 4.6e-193 677.9 380 81.6
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.6e-188 662.1 386 77.5
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 6.5e-187 657.5 393 76.3
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.8e-184 649.4 415 73.5
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 6.7e-184 647.5 380 75.8
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.7e-182 642.9 379 78.1
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 3.7e-182 641.7 379 77.0
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 9.1e-181 637.1 380 73.7
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 5.1e-176 621.3 342 81.9
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 2.9e-171 605.5 381 70.9
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 8.2e-166 587.4 384 72.7
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 2.0e-164 582.8 380 69.2
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 7.2e-162 574.3 377 72.9
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.6e-161 573.2 403 69.7
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 7.7e-156 554.3 354 73.2
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 3.8e-147 525.4 382 63.9
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.1e-145 519.6 397 62.2
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.4e-141 505.0 247 91.1
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 2.0e-140 503.1 268 84.3
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 2.2e-134 483.0 282 78.7
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.9e-133 479.9 241 88.4
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 6.4e-126 454.9 227 89.0
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 9.6e-82 308.1 196 75.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 5.5e-77 292.4 182 74.7
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.6e-71 273.5 189 65.6
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.1e-69 268.1 132 89.4
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.1e-66 258.1 133 85.7
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 1.1e-64 251.5 216 62.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 2.9e-62 243.4 133 82.7
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.2e-60 238.0 314 47.1
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.6e-60 237.7 142 78.2
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.3e-49 201.4 116 73.3
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.3e-49 201.4 119 79.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 1.3e-46 191.4 252 48.0
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 6.3e-41 172.6 82 91.5
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 7.2e-37 159.1 164 51.2
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 1.1e-24 118.6 183 42.6
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 3.5e-23 113.6 55 89.1
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.9e-21 107.8 61 78.7
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.3e-21 106.7 105 51.4
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.9e-16 91.3 68 63.2
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 9.9e-10 68.9 30 93.3
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.9e-08 64.7 54 61.1
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 3.2e-08 63.9 43 65.1
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.5e-07 60.5 31 77.4


User provided reference genes

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