Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.3e-249 865.9 419 100.0
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.2e-178 630.2 354 83.3
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.1e-164 582.8 395 71.1
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 3.6e-164 582.0 345 79.1
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.6e-164 582.0 340 80.0
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 4.7e-164 581.6 322 82.6
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 8.0e-164 580.9 355 76.9
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 6.8e-163 577.8 322 83.5
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 9.8e-162 573.9 329 81.2
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 9.8e-162 573.9 325 82.2
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.3e-161 573.5 337 79.8
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 3.2e-160 568.9 321 81.0
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 6.0e-159 564.7 337 79.8
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 6.0e-159 564.7 337 79.8
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.0e-158 563.9 402 68.9
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.0e-158 563.9 318 82.4
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.3e-158 563.5 322 80.7
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.3e-158 562.8 352 75.0
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.0e-158 562.4 322 81.1
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.1e-157 560.5 405 68.1
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 1.5e-157 560.1 319 81.2
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.5e-157 560.1 395 70.1
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.9e-157 559.7 346 76.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.3e-157 558.9 314 81.8
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.3e-157 558.9 323 81.1
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 4.3e-157 558.5 350 75.1
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 4.3e-157 558.5 322 80.7
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 9.5e-157 557.4 333 78.4
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 6.2e-156 554.7 330 78.2
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 1.1e-155 553.9 330 77.6
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 2.3e-155 552.7 325 79.1
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.0e-155 552.0 329 77.8
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 4.0e-155 552.0 317 80.8
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.2e-154 550.4 329 78.1
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.2e-154 550.4 329 78.1
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.5e-154 550.1 338 76.0
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 3.4e-154 548.9 322 79.5
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 7.5e-154 547.7 318 80.2
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 7.5e-154 547.7 312 80.4
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 9.8e-154 547.4 314 79.3
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 9.8e-154 547.4 317 79.2
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 1.3e-153 547.0 357 73.4
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.7e-153 546.6 310 81.9
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 2.2e-153 546.2 324 75.9
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.2e-153 546.2 333 76.0
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 2.2e-153 546.2 316 79.4
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 4.9e-153 545.0 320 78.1
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 8.3e-153 544.3 322 77.6
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.4e-152 543.5 327 75.5
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.2e-152 542.3 336 75.6
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 3.2e-152 542.3 325 77.2
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.4e-152 541.6 339 75.2
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 7.1e-152 541.2 311 80.7
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 2.7e-151 539.3 339 74.6
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 2.7e-151 539.3 351 71.2
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 4.6e-151 538.5 334 74.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 6.0e-151 538.1 316 76.3
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 7.8e-151 537.7 314 79.9
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.0e-150 537.3 330 77.0
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.3e-150 537.0 359 71.3
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 2.3e-150 536.2 311 78.5
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.9e-150 535.4 330 76.4
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 6.6e-150 534.6 317 77.3
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.6e-150 534.6 315 78.4
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 1.9e-149 533.1 313 78.6
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 3.3e-149 532.3 360 70.6
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 4.3e-149 531.9 308 78.9
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 7.3e-149 531.2 308 80.5
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.2e-148 530.4 312 78.8
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.1e-148 529.6 309 79.9
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.8e-148 529.3 309 79.9
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.8e-148 529.3 304 80.6
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.8e-147 526.6 309 79.0
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.8e-147 526.6 309 79.3
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.3e-147 526.2 306 79.1
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 4.0e-147 525.4 308 77.6
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 6.8e-147 524.6 309 79.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 6.8e-147 524.6 313 76.0
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.5e-146 523.5 336 73.5
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 1.5e-146 523.5 309 79.6
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.6e-146 522.7 309 79.3
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 3.4e-146 522.3 322 77.3
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 7.6e-146 521.2 309 76.4
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 7.6e-146 521.2 309 79.0
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 7.6e-146 521.2 313 75.7
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 6.4e-145 518.1 344 71.5
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 8.4e-145 517.7 311 77.2
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-144 516.2 314 74.5
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-144 516.2 314 75.2
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 4.1e-144 515.4 315 76.5
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 7.1e-144 514.6 311 74.9
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 6.0e-143 511.5 321 73.8
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 3.0e-142 509.2 327 72.8
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 5.1e-142 508.4 339 69.3
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 8.6e-142 507.7 313 74.1
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 4.3e-141 505.4 305 77.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 5.6e-141 505.0 319 74.6
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.1e-136 490.7 304 76.0
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.2e-136 488.8 302 75.5
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.3e-134 483.8 305 72.8
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.3e-129 467.2 312 66.3
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.4e-129 464.9 312 71.2
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.4e-128 461.8 312 71.5
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 8.7e-126 454.5 319 69.6
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 5.6e-125 451.8 309 69.9
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 8.1e-124 448.0 340 62.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.8e-123 446.8 304 70.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 4.0e-123 445.7 394 58.6
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.3e-121 440.7 304 69.4
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 2.4e-120 436.4 306 64.7
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 4.2e-120 435.6 371 60.9
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.5e-120 435.3 481 50.3
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.3e-118 430.6 326 61.3
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.9e-117 426.8 313 62.3
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.5e-117 426.4 274 70.1
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 3.3e-117 426.0 275 72.7
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.6e-116 423.7 287 66.9
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 3.7e-116 422.5 309 61.8
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.4e-107 393.3 313 59.1
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.8e-99 367.1 211 79.1
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 8.5e-97 358.2 212 78.8
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 3.2e-96 356.3 199 81.9
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.7e-94 348.6 213 73.7
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.8e-91 340.5 251 65.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 5.9e-90 335.5 205 76.1
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 3.5e-82 309.7 186 77.4
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 3.8e-81 306.2 176 78.4
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 9.4e-80 301.6 305 48.5
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 7.2e-72 275.4 304 50.7
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 8.0e-47 192.2 208 47.6
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 6.8e-46 189.1 139 63.3
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.5e-40 170.6 99 80.8
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.9e-36 156.4 97 71.1
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.1e-35 155.2 87 77.0
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.2e-31 141.7 78 79.5
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.9e-28 129.8 73 79.5
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.4e-27 128.3 78 79.5
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.2e-27 126.7 91 64.8
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 7.8e-26 122.5 316 28.5
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.7e-23 113.2 309 27.5
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.4e-19 101.7 89 61.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 2.4e-11 74.3 159 28.9
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 9.3e-11 72.4 133 34.6
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.0e-09 68.9 49 67.3
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.5e-08 64.3 41 63.4
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.3e-07 62.0 49 53.1
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 6.9e-06 56.2 40 70.0


User provided reference genes

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