Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.6e-300 1034.6 543 100.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 4.1e-184 648.7 528 67.0
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 6.5e-158 561.6 538 55.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.5e-157 560.5 532 56.4
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 5.5e-157 558.5 528 56.1
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 8.0e-156 554.7 533 56.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.7e-143 513.1 545 51.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.2e-140 504.2 536 51.3
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.3e-139 500.0 535 52.0
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 6.8e-139 498.4 524 51.7
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.5e-138 497.3 485 55.5
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.2e-132 477.6 533 51.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-131 474.6 435 56.3
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.8e-130 468.8 543 49.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.5e-130 468.4 541 49.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.6e-127 460.7 531 47.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 8.6e-126 454.9 533 47.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.6e-125 452.2 532 48.5
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.6e-125 452.2 532 48.5
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.2e-124 451.1 535 46.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.1e-124 450.3 483 49.9
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.8e-124 449.9 534 47.0
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.1e-123 446.4 541 49.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.6e-119 432.6 535 46.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 6.0e-119 432.2 529 48.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.6e-116 424.1 529 47.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.6e-116 424.1 526 47.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.7e-116 422.5 490 48.0
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.1e-115 419.9 529 48.6
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.6e-114 416.8 499 46.7
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.2e-113 413.7 536 46.1
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.9e-113 413.3 536 45.1
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 8.4e-113 411.8 470 47.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 3.2e-112 409.8 528 47.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 9.3e-112 408.3 516 45.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.3e-112 408.3 470 47.7
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.7e-111 406.8 529 44.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.7e-111 406.8 445 48.8
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.0e-110 404.8 542 44.5
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-110 404.4 530 44.9
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.3e-110 404.4 528 46.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.0e-110 403.3 528 44.5
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.6e-109 399.1 488 46.9
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.6e-109 398.3 530 42.8
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-108 397.9 491 45.8
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.1e-108 397.1 530 46.2
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.8e-108 396.7 545 43.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.9e-104 384.0 478 45.6
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.1e-103 380.6 538 41.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.6e-100 370.9 528 42.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.2e-98 364.8 516 44.0
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.4e-98 363.2 537 40.8
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 5.8e-98 362.5 525 42.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.9e-97 360.1 551 38.8
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.5e-95 353.2 539 40.6
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.0e-95 352.4 532 40.6
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.8e-94 350.9 540 40.9
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.0e-91 339.7 555 39.5
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.3e-91 339.3 511 40.3
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.1e-87 327.4 507 38.7
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 4.6e-87 326.2 525 41.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.6e-84 317.8 533 40.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 5.5e-80 302.8 539 38.6
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.3e-77 293.5 532 34.0
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.2e-76 290.8 495 37.4
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.3e-75 286.2 495 37.8
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.3e-75 286.2 499 35.1
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-74 284.6 304 49.0
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.7e-74 282.3 502 36.5
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-73 281.6 524 35.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 3.8e-73 280.0 279 52.0
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.0e-73 279.6 279 52.0
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.9e-72 277.7 523 35.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.2e-72 276.9 528 34.7
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.4e-72 275.4 524 35.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.6e-71 274.6 540 34.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.4e-70 271.6 493 36.1
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.8e-70 271.2 531 34.1
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.9e-70 270.0 501 35.3
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 9.7e-69 265.4 470 37.0
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 9.7e-69 265.4 523 35.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 4.8e-68 263.1 487 36.1
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.2e-68 262.3 489 34.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.8e-67 261.2 525 34.9
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.8e-67 261.2 543 34.6
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 4.1e-67 260.0 273 49.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.2e-66 258.5 545 33.4
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 5.9e-66 256.1 397 37.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.0e-65 255.4 423 38.3
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 6.5e-65 252.7 544 33.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.2e-64 250.0 524 32.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.1e-63 247.7 513 33.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.3e-62 244.2 505 33.1
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-62 243.8 505 33.3
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.1e-62 243.0 389 36.5
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.5e-61 241.5 266 46.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 5.7e-61 239.6 524 33.6
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 3.7e-60 236.9 397 36.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 8.2e-60 235.7 491 34.0
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-59 235.3 381 37.3
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.1e-59 235.3 491 33.2
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.4e-59 234.2 255 53.7
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 9.1e-59 232.3 510 32.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.6e-58 231.5 574 32.2
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.0e-57 228.8 484 31.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.0e-57 228.8 442 34.4
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.7e-57 228.0 460 33.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 5.0e-57 226.5 532 32.9
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.0e-57 226.5 545 31.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.5e-57 226.1 492 32.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 8.5e-57 225.7 498 31.9
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.5e-57 225.7 272 50.0
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.1e-56 225.3 492 33.1
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.1e-56 225.3 294 43.9
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 2.5e-56 224.2 555 29.9
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.5e-56 224.2 298 43.3
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.2e-56 223.8 515 29.5
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.5e-56 223.0 238 47.5
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 9.4e-56 222.2 503 30.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 9.4e-56 222.2 503 30.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.0e-54 218.8 538 29.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.8e-54 218.0 497 31.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 3.0e-54 217.2 530 30.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.0e-54 217.2 523 31.2
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.0e-54 216.9 521 32.4
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 6.7e-54 216.1 498 31.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 7.5e-53 212.6 511 31.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 7.0e-51 206.1 473 32.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.6e-50 204.9 254 49.6
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.5e-50 203.4 404 31.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.0e-49 202.2 522 28.0
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 8.5e-49 199.1 251 48.6
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.5e-48 197.6 403 35.0
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 8.0e-47 192.6 492 27.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.3e-46 191.0 453 32.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.5e-45 188.3 269 45.0
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.1e-43 180.3 586 27.6
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.5e-42 177.2 535 28.6
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 5.9e-42 176.4 511 29.2
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.9e-41 174.1 567 25.9
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.9e-40 171.4 395 29.4
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.2e-40 170.6 452 29.0
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 9.4e-40 169.1 261 42.9
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.2e-39 168.7 420 30.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 6.8e-38 162.9 505 26.7
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 6.8e-38 162.9 300 38.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.5e-37 161.8 252 40.9
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 7.5e-37 159.5 506 26.1
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.7e-36 158.3 440 29.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.8e-36 157.5 522 28.4
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 6.3e-36 156.4 279 34.4
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 7.0e-35 152.9 476 29.0
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 9.2e-35 152.5 441 28.8
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.7e-34 151.0 476 28.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.5e-34 150.6 524 27.5
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.9e-34 149.8 430 28.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.8e-30 138.3 200 39.0
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 7.5e-29 132.9 163 41.1
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.4e-27 127.9 131 47.3
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 4.1e-27 127.1 484 26.0
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 7.8e-26 122.9 245 35.1
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.7e-25 121.7 211 37.0
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.5e-24 118.6 200 40.0
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.5e-24 117.9 275 34.9
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.6e-24 116.7 292 29.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 6.2e-23 113.2 162 38.9
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.0e-21 108.2 237 32.9
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 7.5e-21 106.3 143 45.5
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.3e-20 105.5 258 26.0
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.9e-19 101.7 114 48.2
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 3.5e-18 97.4 259 26.6
Pp3c10_12370 Physcomitrium patens HOM05D003538 ORTHO05D004376 2.3e-17 94.7 575 22.8
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.5e-13 82.0 136 36.0
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 7.5e-13 79.7 283 27.6
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 3.7e-12 77.4 480 23.8
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 2.3e-09 68.2 126 34.1
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 6.8e-06 56.6 114 34.2


User provided reference genes

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