Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 0.0e+00 1232.6 639 100.0
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 3.1e-268 928.3 628 77.2
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.9e-253 877.9 624 70.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 5.9e-251 870.9 634 71.6
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 2.9e-250 868.6 628 71.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.0e-250 867.8 632 71.8
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.2e-248 863.2 637 71.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.5e-241 839.7 628 67.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 9.8e-238 827.0 632 66.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.7e-237 826.2 626 66.9
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.9e-237 825.5 628 67.0
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.1e-236 823.5 631 67.4
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.3e-234 816.6 630 66.2
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 8.6e-234 813.9 640 66.2
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.6e-230 802.4 632 65.7
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.8e-230 800.4 625 65.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.3e-229 800.0 625 65.0
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.7e-229 799.7 625 64.8
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.7e-229 798.5 653 65.2
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 6.0e-227 791.2 634 65.5
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 6.0e-227 791.2 626 64.7
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.5e-225 786.6 624 64.3
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.5e-225 785.8 635 63.9
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 5.6e-225 784.6 636 63.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.6e-224 783.1 630 63.2
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.2e-222 776.9 625 63.5
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 3.4e-222 775.4 623 62.9
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.7e-219 765.8 627 62.8
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.9e-217 759.6 584 67.5
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 7.3e-217 757.7 623 64.2
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 3.6e-216 755.4 568 68.8
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 6.2e-216 754.6 642 62.5
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.1e-215 753.8 622 64.1
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.1e-215 753.8 622 64.1
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.4e-215 752.7 630 63.5
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.4e-215 752.7 620 63.2
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.4e-215 752.7 637 60.9
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.1e-215 752.3 620 63.1
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 3.1e-215 752.3 620 63.1
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 6.8e-215 751.1 624 64.3
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.2e-213 746.1 628 62.3
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 2.2e-213 746.1 677 59.1
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 2.9e-213 745.7 622 61.9
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.1e-212 743.8 567 68.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.4e-212 743.4 627 61.4
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.4e-212 743.4 628 62.3
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 3.2e-212 742.3 627 60.9
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 4.2e-212 741.9 625 61.9
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 4.2e-212 741.9 622 61.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 7.1e-212 741.1 630 61.7
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.2e-211 740.3 633 59.9
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.5e-211 738.8 635 60.5
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 3.5e-211 738.8 630 62.1
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 4.6e-211 738.4 618 63.8
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.3e-210 736.9 628 62.1
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 3.0e-210 735.7 654 59.5
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.1e-209 733.8 567 65.8
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.6e-208 729.9 635 60.2
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 4.0e-207 725.3 641 58.5
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 9.0e-207 724.2 621 60.5
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 9.0e-207 724.2 662 58.6
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.2e-203 713.8 626 58.9
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.6e-203 711.8 624 62.2
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 7.9e-203 711.1 629 59.5
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.7e-202 709.9 532 69.0
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.3e-200 703.7 642 58.9
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 5.8e-198 694.9 518 67.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.2e-196 689.1 512 70.3
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 4.2e-196 688.7 634 57.3
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 5.5e-196 688.3 645 57.4
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.1e-196 688.0 512 70.1
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 9.3e-196 687.6 569 63.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 6.0e-195 684.9 627 58.7
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.0e-189 667.5 641 55.4
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.3e-189 667.2 593 58.2
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.4e-188 663.7 630 55.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.9e-188 663.3 598 57.9
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.1e-187 659.8 528 64.6
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.3e-186 656.4 622 54.5
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.9e-186 655.6 623 55.5
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-184 650.6 629 54.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 5.3e-183 645.2 662 53.5
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.5e-182 643.7 636 56.1
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.8e-176 622.9 465 70.3
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.8e-175 620.2 449 72.2
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 2.5e-172 609.8 625 52.5
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 5.5e-172 608.6 514 61.7
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.6e-171 607.1 628 54.9
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.2e-168 596.7 632 50.0
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 4.8e-168 595.5 551 57.9
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 4.5e-166 589.0 609 56.0
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 7.2e-164 581.6 627 50.1
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.7e-161 572.0 558 54.7
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 6.3e-160 568.5 469 61.6
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 4.2e-156 555.8 660 47.7
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 2.7e-147 526.6 633 48.5
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.8e-136 490.0 586 49.0
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.0e-134 483.8 392 62.5
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 4.7e-123 446.0 482 49.6
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 6.0e-118 429.1 377 59.2
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 5.8e-97 359.4 387 54.0
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 3.6e-91 340.1 653 32.8
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 4.5e-89 333.2 629 36.6
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.8e-89 332.8 635 33.4
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.9e-84 317.8 521 42.2
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.9e-84 317.8 521 42.2
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 3.2e-79 300.4 379 47.5
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.9e-76 291.2 619 31.5
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 2.8e-75 287.3 514 34.8
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.2e-72 277.7 367 47.1
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.5e-60 237.7 261 48.7
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.9e-55 221.5 273 45.4
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.6e-54 218.4 273 45.1
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.1e-50 203.8 182 56.0
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.1e-42 179.1 414 29.5
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.2e-40 171.4 130 66.9
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 5.0e-40 170.2 164 59.1
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-39 169.1 143 58.0
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 2.3e-37 161.4 235 44.7
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 2.0e-36 158.3 164 49.4
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.3e-36 157.5 222 43.7
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.7e-36 156.8 409 32.0
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.8e-34 151.8 142 53.5
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 9.1e-34 149.4 563 27.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.0e-33 148.3 146 52.7
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.9e-33 146.7 376 34.3
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 8.0e-30 136.3 169 40.8
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-27 129.0 137 55.5
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.8e-22 111.3 82 67.1
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.1e-22 110.2 328 28.0
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 8.0e-22 109.8 120 47.5
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.3e-21 108.2 64 82.8
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-18 99.4 122 41.8
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.3e-16 92.4 58 72.4
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 6.6e-16 90.1 88 59.1
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.6e-15 87.0 149 32.9
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 7.5e-12 76.6 77 54.5
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.9e-11 74.7 69 53.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.4e-10 72.4 39 84.6
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 3.0e-08 64.7 113 31.0
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 8.6e-08 63.2 43 65.1
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.1e-07 62.8 90 45.6
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 2.8e-06 58.2 52 53.8
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 2.8e-06 58.2 64 51.6
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 3.6e-06 57.8 93 37.6


User provided reference genes

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